Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01907 ATGTCATCATCCTCTTCAACTACATTATCACTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCAATATCTGTGACACCATCCTCGCTGTTAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGTGGCCATTGCACTAACCTCCTTCCTGGTTTGCTTCTGCCATCCCCCAATCAATTTCATTTGGGCCACTCTTTCTTCTCCCCGACTCATAACCTTCTGGAGGAGATGCCAAACCAGTCTCAAAATTTTCTTATGAACCACACAAATGCATCATCAAATGACTTTTCCATGCCTGCTAGGACTGCTGTAGCTGCAGATCATGAGCTTCCACGCCCACCTATCATAAATAGACGTGAGATTCATTTCAAATCTAACTTCTTTTGTTTGATAAATATATGGTTGAAGCTCAACACACTCACCTTTCTCTCTTGGTCAAAAAGATGCTTCCCTTTCTTGTTCATCTTCCACAATATACTGTATAGTTTTTCGAAAAATGAAAAAAGCAAGCACGCCACTGCATTTATGGTCTCTATTAACAGTTTTGAATCAGGTACTTTGTCAAGTTCAGCTGGTAAAGAGGAAAAAGGTTCTTTTAATTAA 624 0.4119 MSSSSSTTLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPGLLLPSPNQFHLGHSFFSPTHNLLEEMPNQSQNFLMNHTNASSNDFSMPARTAVAADHELPRPPIINRREIHFKSNFFCLINIWLKLNTLTFLSWSKRCFPFLFIFHNILYSFSKNEKSKHATAFMVSINSFESGTLSSSAGKEEKGSFN. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01907 207 PANTHER PROTEIN YABBY 6-RELATED 1 125 IPR006780 GO:0007275
Seca12g01907 207 Pfam YABBY protein 16 80 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01907 Seca-Chr12 22360793 22361900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01907 17 55 C2C2-YABBY Transcription Factor Family AT2G26580 74.359 9.37e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca12g01907 YABBY 7.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01907 K25796 - gmx:100798441 186.808