Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01906 ATGAACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAGCATCTAAAAGGATTGATCTTGATGTCATCAAAGATGTCGATCTCTATAAGATTGAACCATGGGATCTTCAAGAATTATGCAAAATTGGAACGGATGAACAAAGTGACTGGTATTTCTTTAGTCACAAAGACAAGAAGTATCCAACTGGAACCCGCACCAACAGAGCAACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATATACTCTAAGCACAACCTCATTGGTATGAGAAAGACTCTTGTGTTTTACAAAGGACGAGCACCAAATGGACAGAAATCTGATTGGATCATGCATGAGTACCGCCTTGAAACTAATGAAAATGGAACCACTCCGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAGAAGCGAATGACCACAATGCAGAAAGTGGAGTATGAGTCACCTTGTTGGTATGAGGACCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCCAAACAATATTTCTCATCACCCTTATGCATCATCCTACCACCCATGCAAACCGGAGCTTGAATTAATTCAATACAACAACATTCCCCATGATGCTTCTTTCCTCCAACTTCCACAACTAGAAAGCCCAAAAGTCACCCAATCAGCAGCCAGTTCAGTTATTCCTTACGGTTATGCAAGTAACAACAATAACGGAACCGCGTTGCAGTTCTCATCGTCAGTTACTCAAGAAGAACAGATCCAAAACTTTCACCAACAAACTCTGCACTCTCTTTATGGTGGTAACAGCGATCAAGTGGTTGACCAAGTAACGGATTGGAGAGTGCTTGACAAATTTGTTGCTTCTCAGCTCAGTCATGAACAAGACGTTTCAAAGGAAACTGGTAGTTATTCTGATGCAGCGTCTATTCTCCACGTGGCTGAACAACTTACTGTGCTTGCAAATGGATCCAAAATGGCGCAAATTTCACAGGAAAATGCTTCAACATCTACCTCCAGCTGCCAGATTAACCTGTGGAAGTGA 1080 0.4194 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPEEGWVVCRVFKKRMTTMQKVEYESPCWYEDQVSFMQDLESPRPNNISHHPYASSYHPCKPELELIQYNNIPHDASFLQLPQLESPKVTQSAASSVIPYGYASNNNNGTALQFSSSVTQEEQIQNFHQQTLHSLYGGNSDQVVDQVTDWRVLDKFVASQLSHEQDVSKETGSYSDAASILHVAEQLTVLANGSKMAQISQENASTSTSSCQINLWK. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01906 359 FunFam NAC domain-containing protein 16 160 - -
Seca12g01906 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 263 - -
Seca12g01906 359 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Seca12g01906 359 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Seca12g01906 359 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Seca12g01906 359 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01906 Seca-Chr12 22309606 22314289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01906 1 359 NAC Transcription Factor Family AT1G12260 55.851 3.38e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g01906 NAM 8.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01906 - - gmx:100783529 569.696