Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01901 ATGGCGGACGAAGCCAAAGCTAAAGGCAACGCCGCCTTCTCCGCCGCTGATTTCACCGCCGCCATCCGCTACTTCTCCGACGCCATCGCCCTCACCCCTTCCAACCACGTCCTCTACTCAAACCGATCCGCTGCCTACGCCTCCCTTCAAAAGTACGCCGAAGCCTTAGACGACGCTAAAAAAACCGTCGAACTCAAACCCGATTGGTCCAAGGGCTACAGCCGCCTCGGCGCGGCACACCTCGGCCTTGGACACGCACACGACGCCGTTTCCGCTTACAGAAAGGGCCTCGAAATCGACCCCAACAATGAAGCCCTCAAATCCGGCTTAGCCGATGCCCAAGCCGCGGCTTCCCGTTCGGCGAGTAATAGCCCCTTTGGAGATGCCTTCTCTGGCCCAGAGATGTGGGCCCGCCTCACTGCGGACCCAAGCACCAGGGCCTATCTTCAGCAACCTGATTTCGTCAAGATCATGCAGGATATTCAGAAGGATCCTAACAAGCTCAATTTGCACTTGAGTGACCAAAGGGTCTTAAAAGCCCTTGGGGTTGTGCTCAACGTCAAGATTCAAACTCCTAACGACGATGGCAACATTGATATTCCTGAGTCTTCTGCGGATACAGAACCTGAGCGCCAGCCTAGACCCGAACCCGAGCCTGAACCTGAACCCGAGCCAATGGAATTGGCGGAGGAGGAGAAGGAAGCGAAGGAGAAGAAGGCTTTGGCTCAGAAGGAAAAGGAAGCAGGCAATGCGGCTTACAAGAAGAAGAATTTCGAAACGGCAATTCAACATTACTCCAAGGCTTTGGAATTGGATGATGAAGACATATCTTACCTCACTAACCGCGCTGCCGTTTACTTGGAGATGGGAAAGCTTGAGGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGGGGAAGAGAACTAAGATCAGATTATAAGATGATTGCAAGAGCTTTGACAAGGAAAGGAACTGCATTGGTCAAAATGGCAAAGTGCTCTAAGGATTTTGATCCTGCCATTGAGTCTTTCCAAAAGGCACTTACAGAGCACCGCAATCCAGACACCTTGAAGAAACTGAATGAAGCTGAAAGGGCTAAGAAAGAACTAGAACAACAAGAATATTTTGATCCAAAATTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTGTGAGGCATTATACAGAGGCTATAAAGAGGAACCCGAAAGATCATAAGGCATACAGTAACAGAGCTGCATGCTACACGAAACTAGGGGCAATGCCTGAAGGTTTGAAAGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTTTCCAAGGGTTACACCAGGAAGGGTGCAGTACAATTTTTCATGAAAGAATATGAAAAAGCTTTAGAAACATACAAGGAGGGGTTGAAACATGACCCTACCAATCAGGAGTTGCTTGATGGGATTAAAAGGTGTGTAGAACAAATTAACAAGGCTAGCCGGGGAGATTTAAGTCCTGAGGAGTTAAAGGAGAGACAGGCTAAAGCGATGCAGGACCCAGAGATACAGAACATCCTCCAAGACCCAGTTATGAGACAAGTATTGGTTGATTTCCAGGAAAATCCTAGTGCTGCACAGGAACATGCAAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTGATCAGTGCTGGGATTGTCCAGATGAAGTGA 1713 0.4822 MADEAKAKGNAAFSAADFTAAIRYFSDAIALTPSNHVLYSNRSAAYASLQKYAEALDDAKKTVELKPDWSKGYSRLGAAHLGLGHAHDAVSAYRKGLEIDPNNEALKSGLADAQAAASRSASNSPFGDAFSGPEMWARLTADPSTRAYLQQPDFVKIMQDIQKDPNKLNLHLSDQRVLKALGVVLNVKIQTPNDDGNIDIPESSADTEPERQPRPEPEPEPEPEPMELAEEEKEAKEKKALAQKEKEAGNAAYKKKNFETAIQHYSKALELDDEDISYLTNRAAVYLEMGKLEECIKDCDKAVERGRELRSDYKMIARALTRKGTALVKMAKCSKDFDPAIESFQKALTEHRNPDTLKKLNEAERAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVRHYTEAIKRNPKDHKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYEKALETYKEGLKHDPTNQELLDGIKRCVEQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPSAAQEHAKNPMVMNKIQKLISAGIVQMK. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01901 570 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Seca12g01901 570 FunFam hsp70-Hsp90 organizing protein 3-like 380 494 - -
Seca12g01901 570 Pfam Tetratricopeptide repeat 450 482 IPR001440 GO:0005515
Seca12g01901 570 FunFam Stress-induced phosphoprotein 1 239 373 - -
Seca12g01901 570 Gene3D Tetratricopeptide repeat domain 239 375 IPR011990 GO:0005515
Seca12g01901 570 Pfam STI1 domain 511 562 IPR041243 -
Seca12g01901 570 Pfam STI1 domain 133 185 IPR041243 -
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Seca12g01901 570 SUPERFAMILY TPR-like 380 493 IPR011990 GO:0005515
Seca12g01901 570 Pfam TPR repeat 249 290 - -
Seca12g01901 570 Pfam TPR repeat 388 429 - -
Seca12g01901 570 Gene3D - 500 570 - -
Seca12g01901 570 MobiDBLite consensus disorder prediction 204 221 - -
Seca12g01901 570 FunFam Stress-induced phosphoprotein 1 1 116 - -
Seca12g01901 570 MobiDBLite consensus disorder prediction 229 249 - -
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Seca12g01901 570 PANTHER TPR REPEAT CONTAINING PROTEIN 2 542 - -
Seca12g01901 570 Coils Coil 226 248 - -
Seca12g01901 570 Gene3D Tetratricopeptide repeat domain 379 494 IPR011990 GO:0005515
Seca12g01901 570 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Seca12g01901 570 SMART CBM 132 171 IPR006636 -
Seca12g01901 570 SMART CBM 519 558 IPR006636 -
Seca12g01901 570 Pfam Tetratricopeptide repeat 7 67 - -
Seca12g01901 570 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Seca12g01901 570 SMART tpr_5 276 309 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 242 275 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 449 482 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 317 354 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 415 448 IPR019734 GO:0005515
Seca12g01901 570 SMART tpr_5 381 414 IPR019734 GO:0005515
Seca12g01901 570 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 502 570 - -
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 415 448 IPR019734 GO:0005515
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 381 414 IPR019734 GO:0005515
Seca12g01901 570 Coils Coil 353 373 - -
Seca12g01901 570 Gene3D - 123 190 - -
Seca12g01901 570 FunFam Putative stress-induced-phosphoprotein 1 122 190 - -
Seca12g01901 570 ProSiteProfiles TPR repeat profile. 449 482 IPR019734 GO:0005515
Seca12g01901 570 MobiDBLite consensus disorder prediction 191 249 - -
Seca12g01901 570 SUPERFAMILY TPR-like 241 369 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01901 Seca-Chr12 22227556 22231336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01901 1 99 U-box Gene Family AT3G07370 27.273 2.44e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01901 K09553 - gmx:100816776 879.396