Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01900 ATGGCGGCAGAGTCACTCAGAGTGGCCACTTCTTCTCTTTGCAATCTCAATGGATCTCAGAGAAGGCCAACCCCTTTCTCTCCGGTTCGCTTCATGGGTTTGGGTTTTCGCCCTCGACCCTCTCGCTCTTTCGCTTCATCTTCCCGTTCACACTTCTTTGGAAGTTCCCGAATCAACTCCAATTCTTCCACTTTGCCCCAACTTGGTCGAAGAAGAAGCTTATCTGTTTTCGCCATGTCCGCTGATGACGGTAAGCGTGCTGTTCCGTTGAAGGATTATCGCAACATTGGCATCATGGCTCACATAGATGCTGGAAAGACAACTACAACTGAACGAATTCTCTACTATACTGGAAGAAACTACAAAATTGGAGAGGTGCATGAGGGAACAGCAACAATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACCATTACTTCTGCTGCAACCACCACATTTTGGGACAAGCACCGGATCAACATCATTGATACTCCTGGTCATGTTGACTTCACCTTAGAAGTGGAGCGGGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTAGAACCACAATCAGAAACTGTGTGGCGGCAAGCTGATAAATATGGGGTCCCGCGAATTTGTTTTGTCAATAAAATGGACCGCCTTGGAGCAAACTTTTTTCGGACAAGAGATATGATAGTGACAAATTTAGGAGCTAAACCACTTGTACTTCAGTTACCGATTGGGTCAGAAGATAGCTTTAAGGGAGTCATTGATCTTGTTAGGATGAAAGCTATAGTTTGGTCTGGAGAAGAGCTGGGTGCCAAGTTTGATTATGTAGATATTCCAGCAGATCTTCAAGAGCAGGCTCAGGATTACCGATCCCAGATGATAGAAACCATAGTTGAGTTTGATGACCAGGCCATGGAGAATTACCTAGAAGGAATTGAACCAGATGAAGAAACTATAAAAAAATTAATTAGGAAGGGAACCATATCAGCCAGTTTTGTTCCAGTGTTGTGTGGCTCAGCTTTCAAAAACAAGGGGGTCCAACCATTGCTTGATGCTGTGGTGGATTATCTACCATCACCACTTGACCTACCACCAATGAAGGGCTCTGACCCTGAAAACCCCGAAGTGACAATAGAGAGGGTAGCAAATGATGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGCTCGCTTACATTTGTTAGGGTGTATTCCGGAAAGCTAACTGCCGGGTCATATGTACTCAATGCAAACAAAGGAAAAAAGGAGAGGATTGGTAGACTTCTAGAAATGCATGCAAACAGCAGAGAGGATGTTAAAGTAGCTTTAACAGGGGATATTATTGCTCTTGCAGGTTTGAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAATCCAGTCATGCTTGAGCGGATGGACTTCCCCGATCCTGTGATTAAGGTTGCAATTGAACCCAAAACTAAAGCTGATGTTGACAAAATGGCAACTGGTTTAATCAAGCTTGCACAGGAAGATCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAAACAGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATCGACTCAAAAGAGAATTTAAGGTGGAAGCAAATGTTGGTGCTCCTCAAGTGAACTATAGGGAGAGCATTTCCAAAGTCTCGGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAAGGTCAGTTTGCAGATATCACCGTCCGTTTTGAACCCATGGATCCAGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCGAAAGAATACATTCCTGGTGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGTGTTCTTGCTGGCTTTCCAGTTGTTGATGTACGTGCAGTACTTGTAGATGGTTCTTACCATGATGTAGATTCAAGCGTGCTAGCATTCCAGTTGGCAGCAAGAGGAGCTTTCCGGGAAGGAATTAGAAAAGCTAGACCAAGAATGCTTGAACCTATAATGAAGGTTGAAGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTCGGTGACAAACCAGGTGGCCTCAAGGTGGTTGATGCCCTAGTACCTCTTGCTGAGATGTTTCAGTACGTCAGTACACTCAGAGGGATGACAAAAGGCCGTGCCTCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCACAGCACATTCAGAATCAACTTGCCTCAAAAGAGCAAGAAGTTGCCGCTTAA 2343 0.4388 MAAESLRVATSSLCNLNGSQRRPTPFSPVRFMGLGFRPRPSRSFASSSRSHFFGSSRINSNSSTLPQLGRRRSLSVFAMSADDGKRAVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVLQLPIGSEDSFKGVIDLVRMKAIVWSGEELGAKFDYVDIPADLQEQAQDYRSQMIETIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPPMKGSDPENPEVTIERVANDDEPFSGLAFKIMSDPFVGSLTFVRVYSGKLTAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLCDPDNPVMLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGIRKARPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLASKEQEVAA. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01900 780 CDD EF-G 95 365 - -
Seca12g01900 780 FunFam Elongation factor G 375 490 - -
Seca12g01900 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 364 IPR027417 -
Seca12g01900 780 SUPERFAMILY Ribosomal protein S5 domain 2-like 562 682 IPR020568 -
Seca12g01900 780 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 78 776 - -
Seca12g01900 780 Pfam Elongation factor Tu GTP binding domain 92 364 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 366 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 SUPERFAMILY Translation proteins 347 487 IPR009000 -
Seca12g01900 780 SUPERFAMILY EF-G C-terminal domain-like 686 775 IPR035647 -
Seca12g01900 780 SMART EFG_IV_2 563 681 IPR005517 GO:0005525
Seca12g01900 780 PRINTS GTP-binding elongation factor signature 141 149 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Seca12g01900 780 Pfam Elongation factor Tu domain 2 407 474 IPR004161 GO:0005525
Seca12g01900 780 CDD EFG_mtEFG_C 686 764 IPR035649 -
Seca12g01900 780 Hamap Elongation factor G [fusA]. 89 775 IPR004540 GO:0003746|GO:0005525|GO:0006414
Seca12g01900 780 CDD EFG_mtEFG_II 393 475 - -
Seca12g01900 780 Pfam Elongation Factor G, domain III 487 560 IPR041095 -
Seca12g01900 780 Gene3D Elongation Factor G (Translational Gtpase), domain 3 490 567 - -
Seca12g01900 780 Pfam Elongation factor G, domain IV 562 680 IPR005517 GO:0005525
Seca12g01900 780 FunFam Elongation factor G 84 375 - -
Seca12g01900 780 NCBIfam elongation factor G 86 775 IPR004540 GO:0003746|GO:0005525|GO:0006414
Seca12g01900 780 SUPERFAMILY EF-G C-terminal domain-like 487 564 IPR035647 -
Seca12g01900 780 CDD EFG_III 488 563 IPR009022 -
Seca12g01900 780 NCBIfam small GTP-binding protein domain 93 263 IPR005225 GO:0005525
Seca12g01900 780 CDD EFG_mtEFG1_IV 566 681 IPR005517 GO:0005525
Seca12g01900 780 FunFam Elongation factor G 491 567 - -
Seca12g01900 780 FunFam Elongation factor G 687 758 - -
Seca12g01900 780 Hamap Elongation factor G, chloroplastic. 83 780 IPR030848 GO:0003746|GO:0006414|GO:0009507
Seca12g01900 780 Gene3D - 568 771 IPR014721 -
Seca12g01900 780 Gene3D Translation factors 375 489 - -
Seca12g01900 780 FunFam Elongation factor G 568 698 - -
Seca12g01900 780 Pfam Elongation factor G C-terminus 684 770 IPR000640 -
Seca12g01900 780 SMART EFG_C_a 683 771 IPR000640 -
Seca12g01900 780 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Seca12g01900 780 Gene3D - 85 374 IPR027417 -
Seca12g01900 780 Gene3D - 687 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01900 Seca-Chr12 22215152 22219511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01900 668 765 Eukaryotic Initiation Factors Gene Family AT3G22980 31.313 8.29e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01900 K02355 - gmx:102663021 1424.84