Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01887 ATGGGTTCTCAGCAGAACGATGGCACAAGCTACCCACCATCGGAGCCCAAGCCCTGCGCCAACAACTGCGGCTTCTTCGGCACCGCCGGGAACCAGAACCTCTGTTCCAAATGCTACAGAGACTTGTCCATTCAAGAAGAGCATGCCGCTACTGCCAAAACCGCCATGGAGAAATCCCTGCTCCTCCCTGCCGCCGCCGCCATAACCGCCTCTCCGGCCGTTCTTGTAGCGGAACCTTCATCTTCCGCTGAGCCGTCTGCTGCGCCGGCAAAGGCGGCGAATCGGTGCGGCAGTTGTAACAAGAAAGTGGGGTTGACAGGGTTCGTGTGCAAGTGTGGGACCACCTTCTGTGGGACCCATCGTTATCCCGAGAAGCATGAGTGCTCGTATGACTTCAAGACTGCCGGGCGTGATGTGATTTCCAAGGCCAATCCCATAATAAAGGCCGACAAAATTCAAAGGTTCTAG 468 0.5641 MGSQQNDGTSYPPSEPKPCANNCGFFGTAGNQNLCSKCYRDLSIQEEHAATAKTAMEKSLLLPAAAAITASPAVLVAEPSSSAEPSAAPAKAANRCGSCNKKVGLTGFVCKCGTTFCGTHRYPEKHECSYDFKTAGRDVISKANPIIKADKIQRF. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01887 155 Gene3D - 70 151 IPR035896 -
Seca12g01887 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
Seca12g01887 155 Gene3D - 2 61 - -
Seca12g01887 155 Pfam AN1-like Zinc finger 96 132 IPR000058 GO:0008270
Seca12g01887 155 SUPERFAMILY AN1-like Zinc finger 81 150 IPR035896 -
Seca12g01887 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
Seca12g01887 155 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Seca12g01887 155 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Seca12g01887 155 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Seca12g01887 155 FunFam Zinc finger AN1-type containing 6 71 151 - -
Seca12g01887 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 154 - -
Seca12g01887 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01887 Seca-Chr12 21966215 21966682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01887 13 155 C2H2 Transcription Factor Family AT3G52800 39.752 1.64e-37 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01887 12 21966215 21966682 Seca12g01887 12 21966215 21966682 ECH