Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01886 ATGGATCCAATTACATCACATGGTCATTCTCTTCCACCTCCTTTCCACACAACAAGAGATCTCCATCTACACCACCAGCAGCCACCACATCAATTCCACACCACTTTACACCAAACCACAGAAGACGACGAGCAAAGCGGAAGCACCGGAGGCCTTCACAAAAGGGAACGACAAGAAACCACCAACAACGAGCCCAACAACGCAACAGGCTCAGGCGGTGAAGGTGAGATAACAAGAAGACCAAGAGGAAGACCAGCGGGCTCCAAGAACAAGCCCAAACCACCCATCATCATCACACGTGACAGCCCAAACTCCCTAAGAACCCACATGATGGAGGTAGCAGACGGTTGTGACATAATCGAAAGCGTTTCCAACTTCGCTAGAAGGCGTCAGAGAGGGGTTTGCATCATGAGCGGAACTGGAACCGTCACCAACGTCACTCTCAGGCAACCAGCCTCTGCCGGTGCTGTTGTTACTCTCCAAGGAAGGTTCGAGATCTTGTCCCTTTCCGGTTCGTTTCTTCCACCACCGGCTCCACCGCCGGCTTCGGGTTTGACGATATACTTGGCCGGTGGCCAAGGACAGGTGGTAGGAGGAAGTGTGGTTGGGACGCTGGTTGCTTCAGGGCCTGTGATGATTATGGCTGCTTCGTTTAGTAACGCTGCTTATGAGAGGCTTCCTTTGGAAGAAGAAGAAGGTTCGATGGCATTGCAAGGAGGTTCAATTGGATCGCCAGGTGGAAGTGGAGTTGGTGGTCAACCGTCACAGGTTTTAGGAGATGCAACAACTACAACTGCTCCACTCTTTCATGGCTTGCCTCAGAATCTTCTCAATTCTATTCAGATGCCTTCTGAGGCTTTTTGGGCTAATGCTCCTCGCCCTCCTCCATATTGA 894 0.5145 MDPITSHGHSLPPPFHTTRDLHLHHQQPPHQFHTTLHQTTEDDEQSGSTGGLHKRERQETTNNEPNNATGSGGEGEITRRPRGRPAGSKNKPKPPIIITRDSPNSLRTHMMEVADGCDIIESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASAGAVVTLQGRFEILSLSGSFLPPPAPPPASGLTIYLAGGQGQVVGGSVVGTLVASGPVMIMAASFSNAAYERLPLEEEEGSMALQGGSIGSPGGSGVGGQPSQVLGDATTTTAPLFHGLPQNLLNSIQMPSEAFWANAPRPPPY. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01886 297 CDD DUF296 107 174 IPR005175 -
Seca12g01886 297 MobiDBLite consensus disorder prediction 28 46 - -
Seca12g01886 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 232 - -
Seca12g01886 297 FunFam AT-hook motif nuclear-localized protein 106 233 - -
Seca12g01886 297 ProSiteProfiles PPC domain profile profile. 103 240 IPR005175 -
Seca12g01886 297 MobiDBLite consensus disorder prediction 47 61 - -
Seca12g01886 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 220 IPR005175 -
Seca12g01886 297 MobiDBLite consensus disorder prediction 234 253 - -
Seca12g01886 297 PIRSF ESCAROLA 20 295 IPR014476 GO:0003680
Seca12g01886 297 Gene3D - 106 238 - -
Seca12g01886 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 290 IPR014476 GO:0003680
Seca12g01886 297 MobiDBLite consensus disorder prediction 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01886 Seca-Chr12 21916767 21917660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01886 1 295 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 52.802 2.60e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01886 - - gmx:100802044 362.073