Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01885 ATGGAAGACCTAATCGGTGGTAGAAGCGATTTGAATGATGAGAACAATGCATCAGAGGGAGGAGAAGGAATATCAAGTAGCAATGGTAATAATGTTGATAATGAGAACGGTGGTGTTGATGGTGAAGGTGAACACATGGATGAACATTCTGATGCAGAAGTTGATGTTGATGAATATAGAATAGACAATAAGTCAGATATAAAGCGGGTACAATTCTTGAGTTTAACTATAGAAAAGTTTAAATTGTACCACTTCTTCAGTCGGCTTGTGGCATTTGAATTCTATAATAAGTATGCACTGAAAAAGGGATTTGCTGGTCGAAGATGGAATTTTCTAAAAAACAAAAGAGGAGAGGTTACCCAGCAAGAATTTGTGTGTTACAAGGAGGGATTTCGTGACAAGAAACACTTAGAGAGGACTGGTCGAAAGCGAGAGCAGAGAGCAATGACAAGGTGTGGTTGCCCGGCTATTTGTTGTGTGCATCTCGATCGAGAAAGTGGTCGATGGAGGGTGAAAGCATTTAATGATGTTCATAGTCATGAGTTGTTAGGTGAAAAGTATGTACGAATGTTGCCCGCACACAGAAAGATGAATGATTGTGACATAATGCAAATGAATAGTATGAGGGAGGCAGGTATTGGTGTAACACAAATATATAGGTTAGCCGCAAAGCATTGTGGGGGTTACAATAGGATTGGTTATAGGAAGAGAGATATGTACAATGAAATAGTAAGAGAAAGACGTATTCGAGTTAGTGATGCTAGATCAGCTTTATCCTACTTGAGTGGGTTGGGTCGGTCAGATGCAGACCTATATTGGAGACACACTGTTGATGAAGAAGGGAGACTTCATCACTTATTCTGGTGTGATGGAAGAAGTCAATCTGATTACAGGGTTTTTGGAGATGTTGTTGCATTTGATGCAACATATCGCCGAAACAAATACATGTGTCCGTTTGTTGTCTTTGCGGGAGTCAACAATCATAACCAAACGATTGTTTTTTGTTGTGGGCTGGTGGCTAATGAGACAGAGGAGACATACGTTTGGCTACTAAAACAATTCTTGGATGCCATGAAAGGTAAATTTCCAATATCTGTGGTAACGGATGGTGATCTTGCAATGAGAAATGCCATTAAAAATGTTTTTCCGAGTGCACACCATAGGTTGTGTGCATGGCACTTGTTACGCAATGCTACAAGTAATTTAAGTCAAGCAAGTTTCACAGCAAAGTTCAAAAGATGCATGCTTGGTGATTATGAAGTAGGTACCTTTAGGCGGAAGTGGGAAGAGATGGTTGGTGAATTTGGTTTGGAGGGGAATGAATGGGTTCGAGAATTGTATGAAAAGAGGAAAATGTGGGCAACAACGCATATTCGGGGCAACTTCTTTGCGGGTTTCAGGAAAACCTCAAGATGTGAAGGGCTTAATTCGCAAATTGGCAGGTATGTCCATGTTAGAAATAATTTGACTGAGTTTTTGAAACAATTCAGTAGGTATATGGTCTACACTAGGCAAAGAGAGCTTGAGGCGGACTTTGAGTCAATTGTTGGGCATCCTGTGTTGTTGACACATCTACAAGATATAGAGCGCTTTGCAGCTAGGGTATACACTCGTAAGGTGTTTTTTATGTTTCGGACTGTCCTTAATAGAGCATCGAAGTTAAAGATTTTGTCGTTCATGGAAACACTTGCATCTGTTGTGTACATTGTTGGCAAAAGATTAAGTAATGTACATGTATGGAATGTTTCTTTGGTTTCATCAACATCTCAAGTGAAGTGCACCTGTCAGAGGATGGAGTCTAATGGAATTCCGTGTGAACACATAATCACAGTTTTGCATTATTTGGATGTATCGGAGTTTCTTGATTGTCTTGTATTGCCAAGGTGGACCAAATATGCAAAGCAATGTGCTGAAGGAACTAATGGTGAAGGTTCTACAATGACAGATAGAAATTTGAGGAATGGTATGATGGCTCTATTATTTGATTGCCATGAAATGTGTAGACTTGCAAGGAGAAATGAGGACAAGTTAAATGCAACACAAGAACTTGTTAGAAAACATTTGATGACTTTGAAGGAAGCTTCGGATGCAGAAAGTTCAGATGATGGAAATGAAATTGATGTTGAATTTGTGAATGTTTGGGATCTTGTGCGTGTGAGGACTAAAGGGTGCGGTTCGAGACAACAAGCATCAAACAGTAGAGGTGATAGGAGGTCTAATTGTTTCAGTGTATGCCAACGTCCAGGGCATAATAAGACGACGTGTCCAGAACGAGCAGAACCATCCAATCGTCACAGGACTACAGAGGCAAATGACAATGATACTACATACATCCCAATGATGGATGTATAA 2352 0.4005 MEDLIGGRSDLNDENNASEGGEGISSSNGNNVDNENGGVDGEGEHMDEHSDAEVDVDEYRIDNKSDIKRVQFLSLTIEKFKLYHFFSRLVAFEFYNKYALKKGFAGRRWNFLKNKRGEVTQQEFVCYKEGFRDKKHLERTGRKREQRAMTRCGCPAICCVHLDRESGRWRVKAFNDVHSHELLGEKYVRMLPAHRKMNDCDIMQMNSMREAGIGVTQIYRLAAKHCGGYNRIGYRKRDMYNEIVRERRIRVSDARSALSYLSGLGRSDADLYWRHTVDEEGRLHHLFWCDGRSQSDYRVFGDVVAFDATYRRNKYMCPFVVFAGVNNHNQTIVFCCGLVANETEETYVWLLKQFLDAMKGKFPISVVTDGDLAMRNAIKNVFPSAHHRLCAWHLLRNATSNLSQASFTAKFKRCMLGDYEVGTFRRKWEEMVGEFGLEGNEWVRELYEKRKMWATTHIRGNFFAGFRKTSRCEGLNSQIGRYVHVRNNLTEFLKQFSRYMVYTRQRELEADFESIVGHPVLLTHLQDIERFAARVYTRKVFFMFRTVLNRASKLKILSFMETLASVVYIVGKRLSNVHVWNVSLVSSTSQVKCTCQRMESNGIPCEHIITVLHYLDVSEFLDCLVLPRWTKYAKQCAEGTNGEGSTMTDRNLRNGMMALLFDCHEMCRLARRNEDKLNATQELVRKHLMTLKEASDAESSDDGNEIDVEFVNVWDLVRVRTKGCGSRQQASNSRGDRRSNCFSVCQRPGHNKTTCPERAEPSNRHRTTEANDNDTTYIPMMDV. 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01885 783 SMART 26again6 591 618 IPR006564 GO:0008270
Seca12g01885 783 PANTHER OS01G0519700 PROTEIN 91 685 - -
Seca12g01885 783 Pfam SWIM zinc finger 579 615 IPR007527 GO:0008270
Seca12g01885 783 MobiDBLite consensus disorder prediction 38 55 - -
Seca12g01885 783 Pfam FAR1 DNA-binding domain 93 183 IPR004330 -
Seca12g01885 783 MobiDBLite consensus disorder prediction 1 55 - -
Seca12g01885 783 ProSiteProfiles Zinc finger SWIM-type profile. 580 616 IPR007527 GO:0008270
Seca12g01885 783 MobiDBLite consensus disorder prediction 11 35 - -
Seca12g01885 783 Pfam MULE transposase domain 303 397 IPR018289 -
Seca12g01885 783 MobiDBLite consensus disorder prediction 749 783 - -
Seca12g01885 783 MobiDBLite consensus disorder prediction 753 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01885 Seca-Chr12 21898949 21901783 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g01885 MULE 2.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01885 - - tpra:123913749 688.337