Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01876 ATGGAGGCTAGTGGCGGTGTTAGTGGTGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGAGTACCATGTAGCTCCGAGGAACGACAACTCAGCTCCGACCGGTGGATCGACGACACAGATTTCAACAGCGCCGGCGGCGAACCAGGGGAATGTTCCTCCGCCGTCAGTGCCGCCGCATACGGCGGCGTCGACAGTGTTTCCGGCGGGTTCAACGATTCCGGGGAAAAAGAAGAGAGGTCGGCCAAGAAAGTATGCACCGGACGGGTCGGTGACCATGGCGCTGTCTCCTAAACCGATTTCTTCTTCTGCTCCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGAAGCGGGGAAAAGTGAAGCCAGCTAGCTCGGTGAGCAAAACCAAGTTTGAGGTTGAGAATTTAGCTTTTTTAGGTGAATGGGTCGCATGCTCAGTTGGTGCTAATTTTACACCCCACATCATCACTGTTAATTCTGGGGAGGACGTTACTATGAAGGTAATATCTTTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAATGGTGTGATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCAAATGAAAGTGGAGGCACACGAAGCAGATCAGGTGGCATGAGTGTCTCTTTAGCAAGTCCTGATGGACGTGTTGTAGGTGGTGGAGTTGCTGGTCTGTTGGTAGCTGCAAGTCCTGTGCAAGTAGTGGTAGGGAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGACAAAAAAACCAAAACATGATGTGATATCAACTGTGACACCTGCTGCAGTTGTTCCCATCACTACTCTTGATCCTGTACCTATTCTATCATCAGCAACTTCCTTCCGCGGAGATAATTGGTCTGCTATGCCAGCTGATGACAAGAATAAGCCAGCTGACATAAACGTGTCACTTCCTGGAGGCTAA 1011 0.5064 MEASGGVSGGVTVVGSDAPSEYHVAPRNDNSAPTGGSTTQISTAPAANQGNVPPPSVPPHTAASTVFPAGSTIPGKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSAEKRGKVKPASSVSKTKFEVENLAFLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKTKKPKHDVISTVTPAAVVPITTLDPVPILSSATSFRGDNWSAMPADDKNKPADINVSLPGG. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01876 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 294 IPR039605 GO:0003680
Seca12g01876 336 MobiDBLite consensus disorder prediction 1 90 - -
Seca12g01876 336 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Seca12g01876 336 CDD DUF296 152 243 IPR005175 -
Seca12g01876 336 FunFam AT-hook motif nuclear-localized protein 1-like 153 283 - -
Seca12g01876 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 266 IPR005175 -
Seca12g01876 336 Gene3D - 153 285 - -
Seca12g01876 336 MobiDBLite consensus disorder prediction 313 336 - -
Seca12g01876 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 270 - -
Seca12g01876 336 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01876 Seca-Chr12 21715921 21720865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01876 1 333 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 61.345 1.38e-126 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01876 - - gmx:100794202 516.538