Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g01862 | ATGGAAATGAATTCCCTTCATCTCCTTCTTCCTCTGTTTCTTGTGGTTGCACTTCACAGTCTGCAGCTGGTTCATGGAAATGCAGAGGTCAGAGCTCTCATGGACTTGAAATCCTCTCTGGACCCTGAAAACAAGCTCCTTGGGTCGTGGACCAGTGATGGTGATCCATGCAGTGGTTCCTTCTTAGGGGTTGCGTGTAACGAGCATCACAAAGTGGCCAATATATCATTACCAGGAAGGGATCTTTCTGGCCAAGTTTCTCCAGCTGTGGCTGAACTCAAGTGCTTATCAGGTTTATACCTTCATTACAATCAAATATCTGGAGAGATACCCAGAGAGATTTCACATCTCAATGAATTGGTCGAGCTCTATCTTGACTTCAATAATCTATCTGGAAGCATTCCTCCAAATATTGGGAACATGACTAGCCTCCAAGTCTGTATATTAATCCAAGTTCCCTTGTACTTTATACTTTCAGTGCTGCAGTTAGGCTATAACCAGCTAGTAGGGAACATACCTGAGCAGATGGGTTCGTTGAAGCAGCTTAATTCTCTTGCTTTACAACATAACAAATTAACTGGTCATATTCCTCTAAGCTTAGGGAATTTGGAGAAGCTACAAAGGCTAAATTTGAGCTTTAACAACTTCAGTGGTATGATCCCTGCAACACTAGCTGATATTGCACACTTGGAAGTTCTAGATGTTCAAAACAATTCTCTTTCAGGGATTGTTCCTTTTGGATTGAATAGATTAAGGGAAGGATTCCAAGGTGCCAACAACCCAGGCCTCTGTGGAATTGGGTTTTCTTCTTTGAGAGCTTGCAACAAAGATAGCATTTATGGTGTTAGCCAAATTGATGCCTTTAATGTCTCAATAAACACTAATCCTCCAACAAAAAACCCAGAGCCTGCAAATGCCAAATTGCATAGTAACCAGACACACTACTCAAGATCAACAAGGTTTCCCCATGCTGTCATTGCAGCAAGTGTTATAACTATCACTATCACATTCATTGCTATTGGAATTTTCACCTTTGTCAGATATCGCCGCCAAAGGCAGAGGATTAGGAATGCATCAGATCCTTCTGAAGGCCAACTTAGTCCTAACCAACCTAAAAAGTTTTACAGCAGAAGTCCATCTCCACTTGTTAATCTTGATTACTACTATAATGGATGGGATATATTGGCTGATGGTGAAAATGCAAGTGGTTTGTCCCTTGAATATTTAAACAGTTTTAGGTTTAATATTGATGAGGTTGAATCAGCAACACAGTACCTTTCAGAGGCCAATTTATTGGGTAAGAGCAAATTCTCAGCAGTATATAAAGGAGTTCTCAAAGATGGTTCTCATGTGGCCATTAGAAGCATCAGTGTGACATTCTGTAAAAGTGAGGAAACTGAATTTGTAAAGGGGTTGAGCCTATTAACCTCACTGAGACATGAGAACATTGTTAAGATGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGCTTTCTTATCTATGACTTTGCCACCAGAGGAAAACTGTCTCAATATCTTGATATGGAAGATGGTAGTGACAATGTGCTTGAGTGGTCCAAGAGGGTTTCTATCATCAGGGGCATTGCAAAAGGTATTGGGTATCTGCATAGCAATGAAGCAAGCAAACCTACAATAGTACACCAAAATATTTCAGTTGAAAAAGTTATTCTTGACCATCAGTTTAATCCATTGATCATGGATGCTGGCCTCCCTAAGCTTCTTGCAGATGATGTTGTGTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATAACTACTGGACGCTTTACAGAGAAGAGTGACATATATGCATTTGGGGTTATTGTTCTTCAAGTTCTATCTGGGAAGACAACAATAGGTGGTTCAATCAGAATGGCTGTGGAATCTTTCAGATTTGAAGATTTTGTTGACACAAATCTAAATGGAATATATTCTAAATCTGAAGCAGCAATTCTTTCAAAGCTTGCATTGTTGTGCACCCATGAGCTTCCTGACCAAAGGCCAACCATGGTGGAAGTGATTCAGGAGCTGAATATGTTTCCTGCTCTTTTTTCATGA | 2100 | 0.4038 | MEMNSLHLLLPLFLVVALHSLQLVHGNAEVRALMDLKSSLDPENKLLGSWTSDGDPCSGSFLGVACNEHHKVANISLPGRDLSGQVSPAVAELKCLSGLYLHYNQISGEIPREISHLNELVELYLDFNNLSGSIPPNIGNMTSLQVCILIQVPLYFILSVLQLGYNQLVGNIPEQMGSLKQLNSLALQHNKLTGHIPLSLGNLEKLQRLNLSFNNFSGMIPATLADIAHLEVLDVQNNSLSGIVPFGLNRLREGFQGANNPGLCGIGFSSLRACNKDSIYGVSQIDAFNVSINTNPPTKNPEPANAKLHSNQTHYSRSTRFPHAVIAASVITITITFIAIGIFTFVRYRRQRQRIRNASDPSEGQLSPNQPKKFYSRSPSPLVNLDYYYNGWDILADGENASGLSLEYLNSFRFNIDEVESATQYLSEANLLGKSKFSAVYKGVLKDGSHVAIRSISVTFCKSEETEFVKGLSLLTSLRHENIVKMRGFCCSRSRGECFLIYDFATRGKLSQYLDMEDGSDNVLEWSKRVSIIRGIAKGIGYLHSNEASKPTIVHQNISVEKVILDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTIGGSIRMAVESFRFEDFVDTNLNGIYSKSEAAILSKLALLCTHELPDQRPTMVEVIQELNMFPALFS. | 700 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g01862 | 699 | Gene3D | Phosphorylase Kinase; domain 1 | 396 | 504 | - | - | |
Seca12g01862 | 699 | Gene3D | Ribonuclease Inhibitor | 26 | 154 | IPR032675 | - | |
Seca12g01862 | 699 | FunFam | Protein NSP-INTERACTING KINASE 2 | 397 | 504 | - | - | |
Seca12g01862 | 699 | SMART | LRR_typ_2 | 117 | 141 | IPR003591 | - | |
Seca12g01862 | 699 | SMART | LRR_typ_2 | 227 | 250 | IPR003591 | - | |
Seca12g01862 | 699 | SMART | LRR_typ_2 | 93 | 116 | IPR003591 | - | |
Seca12g01862 | 699 | SMART | LRR_typ_2 | 203 | 226 | IPR003591 | - | |
Seca12g01862 | 699 | Gene3D | Transferase(Phosphotransferase) domain 1 | 506 | 694 | - | - | |
Seca12g01862 | 699 | FunFam | Protein NSP-INTERACTING KINASE 2 | 26 | 189 | - | - | |
Seca12g01862 | 699 | Pfam | Leucine rich repeat N-terminal domain | 27 | 67 | IPR013210 | - | |
Seca12g01862 | 699 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 324 | 692 | - | - | |
Seca12g01862 | 699 | FunFam | Protein NSP-INTERACTING KINASE 2 | 505 | 695 | - | - | |
Seca12g01862 | 699 | MobiDBLite | consensus disorder prediction | 356 | 377 | - | - | |
Seca12g01862 | 699 | Pfam | Leucine rich repeat | 181 | 240 | IPR001611 | GO:0005515 | |
Seca12g01862 | 699 | ProSiteProfiles | Protein kinase domain profile. | 426 | 697 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g01862 | 699 | SUPERFAMILY | Protein kinase-like (PK-like) | 402 | 693 | IPR011009 | - | |
Seca12g01862 | 699 | SUPERFAMILY | L domain-like | 29 | 251 | - | - | |
Seca12g01862 | 699 | MobiDBLite | consensus disorder prediction | 358 | 377 | - | - | |
Seca12g01862 | 699 | Pfam | Protein tyrosine and serine/threonine kinase | 430 | 691 | IPR001245 | GO:0004672|GO:0006468 | |
Seca12g01862 | 699 | Gene3D | Ribonuclease Inhibitor | 158 | 266 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g01862 | Seca-Chr12 | 21472246 | 21476316 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g01862 | 5 | 539 | Miscellaneous Gene Families | AT4G22730 | 55.229 | 0.0 | 574 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-IV | Seca12g01862 | PK_Tyr_Ser-Thr | 9.2e-36 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g01862 | - | - | gmx:100784155 | 1008.82 |