Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01862 ATGGAAATGAATTCCCTTCATCTCCTTCTTCCTCTGTTTCTTGTGGTTGCACTTCACAGTCTGCAGCTGGTTCATGGAAATGCAGAGGTCAGAGCTCTCATGGACTTGAAATCCTCTCTGGACCCTGAAAACAAGCTCCTTGGGTCGTGGACCAGTGATGGTGATCCATGCAGTGGTTCCTTCTTAGGGGTTGCGTGTAACGAGCATCACAAAGTGGCCAATATATCATTACCAGGAAGGGATCTTTCTGGCCAAGTTTCTCCAGCTGTGGCTGAACTCAAGTGCTTATCAGGTTTATACCTTCATTACAATCAAATATCTGGAGAGATACCCAGAGAGATTTCACATCTCAATGAATTGGTCGAGCTCTATCTTGACTTCAATAATCTATCTGGAAGCATTCCTCCAAATATTGGGAACATGACTAGCCTCCAAGTCTGTATATTAATCCAAGTTCCCTTGTACTTTATACTTTCAGTGCTGCAGTTAGGCTATAACCAGCTAGTAGGGAACATACCTGAGCAGATGGGTTCGTTGAAGCAGCTTAATTCTCTTGCTTTACAACATAACAAATTAACTGGTCATATTCCTCTAAGCTTAGGGAATTTGGAGAAGCTACAAAGGCTAAATTTGAGCTTTAACAACTTCAGTGGTATGATCCCTGCAACACTAGCTGATATTGCACACTTGGAAGTTCTAGATGTTCAAAACAATTCTCTTTCAGGGATTGTTCCTTTTGGATTGAATAGATTAAGGGAAGGATTCCAAGGTGCCAACAACCCAGGCCTCTGTGGAATTGGGTTTTCTTCTTTGAGAGCTTGCAACAAAGATAGCATTTATGGTGTTAGCCAAATTGATGCCTTTAATGTCTCAATAAACACTAATCCTCCAACAAAAAACCCAGAGCCTGCAAATGCCAAATTGCATAGTAACCAGACACACTACTCAAGATCAACAAGGTTTCCCCATGCTGTCATTGCAGCAAGTGTTATAACTATCACTATCACATTCATTGCTATTGGAATTTTCACCTTTGTCAGATATCGCCGCCAAAGGCAGAGGATTAGGAATGCATCAGATCCTTCTGAAGGCCAACTTAGTCCTAACCAACCTAAAAAGTTTTACAGCAGAAGTCCATCTCCACTTGTTAATCTTGATTACTACTATAATGGATGGGATATATTGGCTGATGGTGAAAATGCAAGTGGTTTGTCCCTTGAATATTTAAACAGTTTTAGGTTTAATATTGATGAGGTTGAATCAGCAACACAGTACCTTTCAGAGGCCAATTTATTGGGTAAGAGCAAATTCTCAGCAGTATATAAAGGAGTTCTCAAAGATGGTTCTCATGTGGCCATTAGAAGCATCAGTGTGACATTCTGTAAAAGTGAGGAAACTGAATTTGTAAAGGGGTTGAGCCTATTAACCTCACTGAGACATGAGAACATTGTTAAGATGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGCTTTCTTATCTATGACTTTGCCACCAGAGGAAAACTGTCTCAATATCTTGATATGGAAGATGGTAGTGACAATGTGCTTGAGTGGTCCAAGAGGGTTTCTATCATCAGGGGCATTGCAAAAGGTATTGGGTATCTGCATAGCAATGAAGCAAGCAAACCTACAATAGTACACCAAAATATTTCAGTTGAAAAAGTTATTCTTGACCATCAGTTTAATCCATTGATCATGGATGCTGGCCTCCCTAAGCTTCTTGCAGATGATGTTGTGTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATAACTACTGGACGCTTTACAGAGAAGAGTGACATATATGCATTTGGGGTTATTGTTCTTCAAGTTCTATCTGGGAAGACAACAATAGGTGGTTCAATCAGAATGGCTGTGGAATCTTTCAGATTTGAAGATTTTGTTGACACAAATCTAAATGGAATATATTCTAAATCTGAAGCAGCAATTCTTTCAAAGCTTGCATTGTTGTGCACCCATGAGCTTCCTGACCAAAGGCCAACCATGGTGGAAGTGATTCAGGAGCTGAATATGTTTCCTGCTCTTTTTTCATGA 2100 0.4038 MEMNSLHLLLPLFLVVALHSLQLVHGNAEVRALMDLKSSLDPENKLLGSWTSDGDPCSGSFLGVACNEHHKVANISLPGRDLSGQVSPAVAELKCLSGLYLHYNQISGEIPREISHLNELVELYLDFNNLSGSIPPNIGNMTSLQVCILIQVPLYFILSVLQLGYNQLVGNIPEQMGSLKQLNSLALQHNKLTGHIPLSLGNLEKLQRLNLSFNNFSGMIPATLADIAHLEVLDVQNNSLSGIVPFGLNRLREGFQGANNPGLCGIGFSSLRACNKDSIYGVSQIDAFNVSINTNPPTKNPEPANAKLHSNQTHYSRSTRFPHAVIAASVITITITFIAIGIFTFVRYRRQRQRIRNASDPSEGQLSPNQPKKFYSRSPSPLVNLDYYYNGWDILADGENASGLSLEYLNSFRFNIDEVESATQYLSEANLLGKSKFSAVYKGVLKDGSHVAIRSISVTFCKSEETEFVKGLSLLTSLRHENIVKMRGFCCSRSRGECFLIYDFATRGKLSQYLDMEDGSDNVLEWSKRVSIIRGIAKGIGYLHSNEASKPTIVHQNISVEKVILDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTIGGSIRMAVESFRFEDFVDTNLNGIYSKSEAAILSKLALLCTHELPDQRPTMVEVIQELNMFPALFS. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01862 699 Gene3D Phosphorylase Kinase; domain 1 396 504 - -
Seca12g01862 699 Gene3D Ribonuclease Inhibitor 26 154 IPR032675 -
Seca12g01862 699 FunFam Protein NSP-INTERACTING KINASE 2 397 504 - -
Seca12g01862 699 SMART LRR_typ_2 117 141 IPR003591 -
Seca12g01862 699 SMART LRR_typ_2 227 250 IPR003591 -
Seca12g01862 699 SMART LRR_typ_2 93 116 IPR003591 -
Seca12g01862 699 SMART LRR_typ_2 203 226 IPR003591 -
Seca12g01862 699 Gene3D Transferase(Phosphotransferase) domain 1 506 694 - -
Seca12g01862 699 FunFam Protein NSP-INTERACTING KINASE 2 26 189 - -
Seca12g01862 699 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Seca12g01862 699 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 324 692 - -
Seca12g01862 699 FunFam Protein NSP-INTERACTING KINASE 2 505 695 - -
Seca12g01862 699 MobiDBLite consensus disorder prediction 356 377 - -
Seca12g01862 699 Pfam Leucine rich repeat 181 240 IPR001611 GO:0005515
Seca12g01862 699 ProSiteProfiles Protein kinase domain profile. 426 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01862 699 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Seca12g01862 699 SUPERFAMILY L domain-like 29 251 - -
Seca12g01862 699 MobiDBLite consensus disorder prediction 358 377 - -
Seca12g01862 699 Pfam Protein tyrosine and serine/threonine kinase 430 691 IPR001245 GO:0004672|GO:0006468
Seca12g01862 699 Gene3D Ribonuclease Inhibitor 158 266 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01862 Seca-Chr12 21472246 21476316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01862 5 539 Miscellaneous Gene Families AT4G22730 55.229 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca12g01862 PK_Tyr_Ser-Thr 9.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01862 - - gmx:100784155 1008.82