Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01860 ATGGGTCGTATGCACAGTCGCGGTAAGGGTATATCCTCTTCTGCTCTTCCATACAAGAGGACACCTCCAAGCTGGCTCAAGATCTCTTCCCAAGATGTGGAAGAGAATATCTGCAAGTTCGCGAAGAAGGGTTTGACGCCATCTCAGATCGGTGTCATTCTTCGAGATTCTCACGGAATCGCTCAGGTTAAGAGCGTCACTGGCAGCAAAATCCTTCGCATCCTCAAAGCTCATGGACTTGCGCCTGAAATTCCAGAGGATCTGTACCATTTGATCAAGAAGGCAGTTTCAATTAGGAAGCATTTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTTAGGTTGATTCTTGTGGAGAGCAGAATCCACCGACTTGCTCGCTATTACAAGAAGACTAAGAAGCTCCCACCAGTCTGGAAGTAG 423 0.4752 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01860 140 FunFam 40S ribosomal protein S13 83 140 - -
Seca12g01860 140 Pfam Ribosomal protein S15 74 134 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca12g01860 140 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca12g01860 140 Hamap 30S ribosomal protein S15 [rpsO]. 3 140 IPR023029 -
Seca12g01860 140 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 140 IPR023029 -
Seca12g01860 140 Gene3D - 83 140 - -
Seca12g01860 140 SUPERFAMILY S15/NS1 RNA-binding domain 66 139 IPR009068 -
Seca12g01860 140 CDD Ribosomal_S15p_S13e 70 140 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca12g01860 140 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca12g01860 140 FunFam 40S ribosomal protein S13 35 82 - -
Seca12g01860 140 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca12g01860 140 SMART Ribosomal_S15_2 70 140 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca12g01860 140 Gene3D - 35 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01860 Seca-Chr12 21458350 21459073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01860 1 140 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.571 5.49e-95 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01860 K02953 - egr:104453961 280.796