Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01852 ATGCCTATGAAACCGAATTCAGTAGTATGGGGATGTTTGATGGGAGCGTGTGAAAAACATGGGAATGTGGATATGGCAGAGTGGGTAGCTAAGCATTTGCAAACATTAGAACCTTGGAATGGTGGCGTTTACGTGGTATTGTCTAATGTATATGCCAATAAAGGCTTGTGGAAGGAAGTGGAGAGGATAAGATCAGTCATGAAAGAAGGAATACTTGCTAAGAACGAACCTCATGCCATATACTGGTTACTAGTAAACTTTCTATTTTACAATGACAAGGGGAAACCGCAACAGAACAATCTATGCATATTGGGAGCATCTACTATTGAAGATAAACTGCAGCAAGGTGTGCCAGAAGCTATTGAGTCTTTAAGGACTGCAGGTATTAAAGTATGGGTGTTAATTGGGGACAAACAAGAAACTGCCTTAAAGCTCTTGACAAACAAAAAGATTGTTTGGGTTGGGTGTAATCCAGAGTAG 480 0.4042 MPMKPNSVVWGCLMGACEKHGNVDMAEWVAKHLQTLEPWNGGVYVVLSNVYANKGLWKEVERIRSVMKEGILAKNEPHAIYWLLVNFLFYNDKGKPQQNNLCILGASTIEDKLQQGVPEAIESLRTAGIKVWVLIGDKQETALKLLTNKKIVWVGCNPE. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01852 159 Pfam E motif 20 70 IPR046848 -
Seca12g01852 159 SUPERFAMILY HAD-like 61 152 IPR036412 -
Seca12g01852 159 Gene3D - 104 156 IPR023214 -
Seca12g01852 159 Gene3D Tetratricopeptide repeat domain 1 103 IPR011990 GO:0005515
Seca12g01852 159 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 76 IPR046960 GO:0003723|GO:0009451
Seca12g01852 159 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01852 Seca-Chr12 21326537 21331221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01852 98 145 Primary Pumps ATPases AT5G04930 75.000 3.74e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01852 - - pvu:PHAVU_002G309900g 145.591