Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01849 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGCCCATGGACTGCTGAGGAAGACAAGAAACTCATCAATTTCATTCTCACCAATGGACAGTGTTGTTGGCGTGCTGTTCCTAAACTTGCTGGCCTTAGGCGTTGTGGTAAGAGTTGTAGGCTTCGTTGGACTAATTATCTTAGGCCTGACTTAAAGAGAGGACTCCTCACAGAAGCAGAGGAGCAGCTTGTGATTGATCTCCATGCCCGTCTTGGTAACAGGTGGTCCAAGATTGCTGCTAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACTCATATCAAGAAAAAACTCCTTAAGATGGGTATTGATCCAGTTACTCATGAACCACTCAATAAACAAGCTGCATCTCAGGATAGTTCATCCCCTGAAGAGAATTTGCCACAACCTGGCAATAAGTCCCATCAGGTCAAGGAAACTGATGGGGTTGTCAACTCAGAGGAGAATTCAAGTTCTTCCCCAGCTGAAAATTCTTCAGGAGAAGAATCCCTTTTGCTAGATAGCATTTGCAGTGATGACTCTTTACTAAATAGCCTGTGGCTTGATGAAACTCCACTGGTGGAAGCATTATGGGACACTACTCCTATAGCAGAGAATCCTAAAGATGACATGGGCTTTTTACCATCTTGGGAGGACAATTGTGCTTGGCTATTGGATTGTCAGGACTTTGGTATTCATGATTTTGGGTTTAACTCTTTCAATGAGGTAGAGTCAAATGCACTGCAAACTATAGGGATAAAGGAAGAGGAGCATTAG 810 0.4383 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQDSSSPEENLPQPGNKSHQVKETDGVVNSEENSSSSPAENSSGEESLLLDSICSDDSLLNSLWLDETPLVEALWDTTPIAENPKDDMGFLPSWEDNCAWLLDCQDFGIHDFGFNSFNEVESNALQTIGIKEEEH. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01849 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g01849 269 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Seca12g01849 269 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca12g01849 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca12g01849 269 Gene3D - 71 156 - -
Seca12g01849 269 FunFam MYB transcription factor 11 67 - -
Seca12g01849 269 CDD SANT 16 61 IPR001005 -
Seca12g01849 269 FunFam MYB transcription factor 70 146 - -
Seca12g01849 269 Gene3D - 12 67 - -
Seca12g01849 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g01849 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca12g01849 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 177 - -
Seca12g01849 269 CDD SANT 71 112 IPR001005 -
Seca12g01849 269 SMART sant 13 63 IPR001005 -
Seca12g01849 269 SMART sant 66 114 IPR001005 -
Seca12g01849 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca12g01849 269 MobiDBLite consensus disorder prediction 130 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01849 Seca-Chr12 21237341 21239609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01849 1 248 MYB Transcription Factor Family AT4G22680 60.526 3.39e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g01849 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01849 K09422 - gmx:100786965 464.151