LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g01844	ATGCCACCTACAGTTATGAGCTCAAAGGAACAGCCACGATTGATTTATTCTTACCGGAATGTGCTGAGTGGTTTTGCCGCAAGACTCACTCAAGAGGAGCTCAGAGCTGTTGAAAAGAAAAATGGCTTTATTTCAGCTCATCCTGAAAAGATGCTATTTCAGCAAACCACGCATACCCCAAAATTCTTGGGGTTGCAGCCAAAAATGGGATTATGGAAGGAATCAAATTTTGGAAAGGGAGTTATAATAGGGGTGCTAGATTCTGGAATCACACCTGATCATCCTTCATTTAGTGATGCAGGAATGCCACCACCACCACCTAAATGGAAAGGGAGATGCGAACTTAATGGGACAACTTGTAACAACAAACTAATTGGAGCAAGGTCCTTCAACAATGCAGAGGCACCAATTGATGAGGATGGACATGGGACTCACACAGCAAGCACAGCAGCTGGTGCTTTTGTGGACTATGCAGAAGTACTAGGAAATGCCAAAGGCACAGCAGCAGGGATGGCCCCTTATGCTCACTTGGCAATTTACAAAGTATGCTTTGAAGAAGACTGCCCTGAGAGTGATATTCTAGCTGCCTTAGATGCAGCTGTGGAGGATGGTGTTGATGTAATATCCATATCCCTTGGTCTAAGTGAGCCACCTCCATTTTTCAATGATAGTACTGCAATAGGTGCATTTGCAGCAATTCAAAAGGGAATCTTTGTAAGTTGTGCAGCAGGAAACTCTGGCCCTTTGAGTGGCTCCTTAGTTAATGGAGCCCCATGGATCCTCACAGTTGGAGCAAGCACTATTGACAGAAGGATTGTTGCAACAGCAAAGCTTGGAAATGGACAAGAATTTGATGGTGAATCTGTTTTCCAGCCTTCTAATTTTTCTACAACATTGCTATCCTTAGCATATGCAGGGAAGAATGGCAAACAAGAATCTGCACTTTGTGCAAATGGATCCTTAGGAGGGGGTATATCAAGAATTGCCAAAGGAAAGGAAGTAAAAAGAGTAGGAGGTGCAGCCATGATTCTTATGAATGATAAAGTCAATGGCTTTAGTATTACAGCTGATGTACATGTTCTACCTGCAACGCATGTAAGCTATGCTGCTGGACTAAAGATTAAGGCCTATATAAATTCCACTGTGACACCTACAGCAACCATTTTATTTAAGGGAACTATTATCGGACACTCCCAATCCCCTGCTGTTGCATCCTTTTCATCAAGAGGTCCCAACTCGCCAAGTCCTGGTATTTTGAAACCGGATATCATAGGACCAGGTGAGAACATCCTAGCTGCCTGGCCATTCCCCCTGGATAACAGCACCAATTCAAAACTGACTTTCAACATCATGTCTGGCACATCAATGTCATGCCCACATCTTAGCGGCATTGCTGCTTTGCTCAAATGCTCTCATCCTCATTGGTCACCAGCTGCCATAAAATCTGCCATAATGACTTCAGCAGACATACTAAATTTAGGAAACAAACCCATTGATATCTTTGCTACAGGTTCTGGTCACGTGAATCCATCAAGAGCAAATGATCCTGGATTAGTTTATGATATCAAACCTGATGATTATATACCTTATCTGTGTGGCTTAGGCTACAGTGATACGGAAGTTGGGATCATAGCACATAGAACAATTAAGTGCTCTGAGACTTCAAGCATTCCTGAAGGAGAGCTCAACTACCCTTCATTTTCTGTTGTGCTTGGTCCGTCACAGACATTCAAGAGGACTGTGACAACAGCCAAATAA	1758	0.4317	MPPTVMSSKEQPRLIYSYRNVLSGFAARLTQEELRAVEKKNGFISAHPEKMLFQQTTHTPKFLGLQPKMGLWKESNFGKGVIIGVLDSGITPDHPSFSDAGMPPPPPKWKGRCELNGTTCNNKLIGARSFNNAEAPIDEDGHGTHTASTAAGAFVDYAEVLGNAKGTAAGMAPYAHLAIYKVCFEEDCPESDILAALDAAVEDGVDVISISLGLSEPPPFFNDSTAIGAFAAIQKGIFVSCAAGNSGPLSGSLVNGAPWILTVGASTIDRRIVATAKLGNGQEFDGESVFQPSNFSTTLLSLAYAGKNGKQESALCANGSLGGGISRIAKGKEVKRVGGAAMILMNDKVNGFSITADVHVLPATHVSYAAGLKIKAYINSTVTPTATILFKGTIIGHSQSPAVASFSSRGPNSPSPGILKPDIIGPGENILAAWPFPLDNSTNSKLTFNIMSGTSMSCPHLSGIAALLKCSHPHWSPAAIKSAIMTSADILNLGNKPIDIFATGSGHVNPSRANDPGLVYDIKPDDYIPYLCGLGYSDTEVGIIAHRTIKCSETSSIPEGELNYPSFSVVLGPSQTFKRTVTTAK.	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g01844	585	Gene3D	Peptidase S8/S53 domain	80	527	IPR036852	GO:0004252\|GO:0006508
	Seca12g01844	585	SUPERFAMILY	Subtilisin-like	54	518	IPR036852	GO:0004252\|GO:0006508
	Seca12g01844	585	PRINTS	Subtilisin serine protease family (S8) signature	138	151	IPR015500	-
	Seca12g01844	585	PRINTS	Subtilisin serine protease family (S8) signature	452	468	IPR015500	-
	Seca12g01844	585	PRINTS	Subtilisin serine protease family (S8) signature	78	97	IPR015500	-
	Seca12g01844	585	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	1	53	IPR037045	-
	Seca12g01844	585	CDD	Peptidases_S8_3	55	489	IPR034197	-
	Seca12g01844	585	ProSiteProfiles	Serine proteases, subtilase domain profile.	62	514	-	-
	Seca12g01844	585	Gene3D	-	531	585	-	-
	Seca12g01844	585	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	11	583	IPR045051	-
	Seca12g01844	585	ProSitePatterns	Serine proteases, subtilase family, aspartic acid active site.	83	94	IPR023827	-
	Seca12g01844	585	Gene3D	-	269	396	-	-
	Seca12g01844	585	CDD	PA_subtilisin_like	275	388	-	-
	Seca12g01844	585	Pfam	Peptidase inhibitor I9	9	49	IPR010259	-
	Seca12g01844	585	FunFam	Subtilisin-like protease SBT1.5	80	293	-	-
	Seca12g01844	585	Pfam	Subtilase family	78	491	IPR000209	GO:0006508\|GO:0008236

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g01844	Seca-Chr12	21160228	21162078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g01844	13	583	Subtilisin-like Serine Gene Family	AT1G04110	45.833	9.81e-180	525

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g01844	-		-	gmx:100812208	1002.28