Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01842 ATGGATTACATGTTCCAATTTGACCAAACAGATGATTGTTCCAATTTTTTCCCTCTCCCTTCCAGTCCCAACACCAACAAGAAGATCAACAACCTCAATCTTCTACTGAATGAGGATGACGCCAACCTCTCCTCCCATATACTATCTAGCTTTGGCAGCTGGCAGTGTAAATCACCATCATTATCTTTTGATGAATTTGATAGCAAACCTAATGAAACCAAGAAGAGAAAGATCATGCATAGAGATATTGAAAGACAAAGAAGGCAAGAAATGGCCACTCTTCACGCTTCTCTGCGGTCACTACTCCCTGTAGAATACCTAAAGGGAAAGCGTTCAATGTCAGATCACATGCACCAGGCGGTGAATTATATCAAACACCTTGGGAACAAGGTCGAGGAGCTAAATAACAAGAGAGATAGGCTGCGAAAATTGTGCAATACAGGAAAAATGGAAAATTCCCAGGCAGCCAAACAGGATGTTGTTGTGACAGTTAGACCATGTAGGATAGGAATAGAGGTTGTCATAAGCACTGCACTTGAAGAAGGATTTCCTCTCTCAAGAGTGCTCCAAGCTTTAATTAGAGAAGGGCTCAGAGTTATCAATTGCAGTTCAACTAAAGTAAAAGGAAGGTTATTTCATACTATTGAATCCGAGTTTTCATTCAGGAGAACAATGGTGGAAGAAGAATCGACCAGTCTGAGCTACAACAAAAATTGA 717 0.4073 MDYMFQFDQTDDCSNFFPLPSSPNTNKKINNLNLLLNEDDANLSSHILSSFGSWQCKSPSLSFDEFDSKPNETKKRKIMHRDIERQRRQEMATLHASLRSLLPVEYLKGKRSMSDHMHQAVNYIKHLGNKVEELNNKRDRLRKLCNTGKMENSQAAKQDVVVTVRPCRIGIEVVISTALEEGFPLSRVLQALIREGLRVINCSSTKVKGRLFHTIESEFSFRRTMVEEESTSLSYNKN. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01842 238 CDD bHLH_AtORG2_like 76 144 - -
Seca12g01842 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
Seca12g01842 238 Coils Coil 124 151 - -
Seca12g01842 238 Gene3D - 66 157 IPR036638 GO:0046983
Seca12g01842 238 Pfam Helix-loop-helix DNA-binding domain 76 127 IPR011598 GO:0046983
Seca12g01842 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 146 IPR036638 GO:0046983
Seca12g01842 238 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 234 - -
Seca12g01842 238 FunFam Transcription factor bHLH126 67 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01842 Seca-Chr12 21146949 21148493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01842 71 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 43.671 1.14e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g01842 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01842 - - aprc:113851145 291.967