Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01839 ATGGCTGCAATTCATCAACATTGTAGCTTCTCGTTGATCACATTTACATGGGTGTTAGCAATCATAGCAAAGCCTGCGGTAGTAGCAGGCAGATTTCAACCCAGTCAATGGACTCTTGCACATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCATGTGGGTATGGAAATTTGTTCCTGAACGGTTACGGAACAGATACGGCGGCTTTGAGCTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGCGTCCAATCGAGTGCATGCTACACCAATGTGCCTTACACCACAGTGACTGCCACTAATCTTTGCCCTCCTAATTGGGCTGAGGCCTCTGATAACGGTGGTTGGTGCAACCCACCACGTGCACATTTTGACATGTCCAAGCCTGCCTTCATGAAAATTGCACAGTGGAAAGCTGGCATTGTCCCTGTTATGTACCGCAGAGTACCGTGTATAAGGAGTAGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTAGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATTGCAAACATGTGGGTGAAAGGAAGCAGAACAGGGTGGATTAGCATGAGCCACAATTGGGGGGCTTCTTACCAGGCATTTGCAACACTAAGTGGCCAAGCTCTTTCTTTCAAGATTACTTCCTACACAACCAGAGAAACTATAATAGCATGGAATGTTGCTCCTGCCAATTGGGGTGCAGGACTAACTTATTCCACCAATGTTAACTTCCACTAA 792 0.4583 MAAIHQHCSFSLITFTWVLAIIAKPAVVAGRFQPSQWTLAHATFYGDETASATMGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACYTNVPYTTVTATNLCPPNWAEASDNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPVMYRRVPCIRSRGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLSGQALSFKITSYTTRETIIAWNVAPANWGAGLTYSTNVNFH. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01839 263 PANTHER EXPANSIN-A15 16 258 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Seca12g01839 263 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Seca12g01839 263 SUPERFAMILY PHL pollen allergen 167 257 IPR036749 -
Seca12g01839 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Seca12g01839 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Seca12g01839 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Seca12g01839 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Seca12g01839 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Seca12g01839 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Seca12g01839 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Seca12g01839 263 Gene3D - 169 263 IPR036749 -
Seca12g01839 263 CDD DPBB_EXPA_N 36 163 - -
Seca12g01839 263 Gene3D - 23 163 IPR036908 -
Seca12g01839 263 Pfam Lytic transglycolase 72 158 IPR009009 -
Seca12g01839 263 SMART dpbb_1 72 158 IPR007112 -
Seca12g01839 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Seca12g01839 263 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Seca12g01839 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01839 Seca-Chr12 21103626 21106129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01839 1 263 Expansin Gene Family AT1G12560 65.530 3.43e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01839 - - gmx:100781459 504.212