Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01834 ATGGTGAGGGGAAAAACTCAGATGAAGCGCATCGAAAATGAGACAAGCAGGCAAGTAACTTTCTCCAAGAGAAGAAATGGACTTCTTAAGAAGGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTACCAGAGGGAAGCTCTATGAGTTCTCCAGTTCCAGGTACAGTATCTTCAACCCCTTCCTCTTACAACTACTTAATAATTTGTATATATACTAG 240 0.4208 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSSRYSIFNPFLLQLLNNLYIY. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01834 79 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Seca12g01834 79 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Seca12g01834 79 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g01834 79 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Seca12g01834 79 FunFam Agamous-like MADS-box protein AGL13 13 68 - -
Seca12g01834 79 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01834 Seca-Chr12 21011102 21011341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01834 1 60 MADS-box Gene Family AT4G11880 95.000 3.20e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g01834 SRF-TF 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01834 - - gmx:100805260 116.316