Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01828 ATGGATCAAGACGACGACGGAGGAACGACGGACCTCAGCACCAGCGACGGCGACCCAAATAGGGACCCACCTGAAAGCAACAAAAACAACAATGGAGTCTTCAAACCCCGCATGTTCGAGGAGGATACCACAGTCTTGACGCTGAAGGAGGAACCAACCTATTCGGATCCTGACCAGGACCCGAAGGCTAACCCTGCACCTATGGGGATTGTTCCGGTGGCGATGCAGATGCCTATACCTATGCCTATGCCCGTGCCGGTTAAAGCAGCTAAGCGACCCTCCACCAAGGACCGTCACACCAAGGTGGAGGGTCGTGGCCGCAGGATCCGAATACCCGCCACCTGTGCTGCTCGGATCTTTCAGCTGACCCGGGAGTTAGGCCACAAGTCCGACGGCGAAACCGTGCGGTGGCTTCTAGAACACGCTGAGCATGCAATCATCGAGGCCACTGGAACCGGCACCGTTCCAGCCATCGCCGTCTCCGTCGGGGGCACTCTGAAAATCCCAACGACGTCGTCGAACCAGGCCGCCGACGAAGCCAACGCCAAGAAGCGGAAACGGCCTTCCAACAGCGAGTTCGTCGACGTAAACGACGCCGTTTCTCTGCCGTCTGGTCTGGCACCGGTTCAAGCCGCGGTGCCACAAGGTCTGGTGCCGGTCTGGGCCGTGGGTAACACGAACATGGTGGTCCCCGCAAACACCTTCTGGATGATCCCGTCGGCGGCGGCGGCGACAATAACCAACCTTACAGGCACGTCGAACCAGCAACCTCAGATATGGGCTTTATCACCGTCAATGTTCAACGTGGCGGCGAGGCCCATGGCGACAACGAATGTTCCAGAAGTTTGGCCCGTGGCGGCGGGTTTCAGTAACACATCTAACTCAGCGGTGAGTACTAGCACGGTGGGGCCTAAGGTATCAAACAACTCCAGCATGGCACCCAGTGTTAGTTCCAGCGCTAATAAGACCAGTGGTGGTGGCAAGGCTCAGATGTTAAGGGATTTTTCGTTGGAAATTTACGATAAGCAAGAGTTGCAGTTCATGGGCCGGTCTGGGACTCTGAGTCAACATGCTCAAAATTCCAATCAATGA 1092 0.5678 MDQDDDGGTTDLSTSDGDPNRDPPESNKNNNGVFKPRMFEEDTTVLTLKEEPTYSDPDQDPKANPAPMGIVPVAMQMPIPMPMPVPVKAAKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVSVGGTLKIPTTSSNQAADEANAKKRKRPSNSEFVDVNDAVSLPSGLAPVQAAVPQGLVPVWAVGNTNMVVPANTFWMIPSAAAATITNLTGTSNQQPQIWALSPSMFNVAARPMATTNVPEVWPVAAGFSNTSNSAVSTSTVGPKVSNNSSMAPSVSSSANKTSGGGKAQMLRDFSLEIYDKQELQFMGRSGTLSQHAQNSNQ. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01828 363 MobiDBLite consensus disorder prediction 170 190 - -
Seca12g01828 363 ProSiteProfiles TCP domain profile. 95 149 IPR017887 -
Seca12g01828 363 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 343 IPR005333 GO:0003700
Seca12g01828 363 MobiDBLite consensus disorder prediction 293 326 - -
Seca12g01828 363 Pfam TCP family transcription factor 94 180 IPR017887 -
Seca12g01828 363 MobiDBLite consensus disorder prediction 42 57 - -
Seca12g01828 363 MobiDBLite consensus disorder prediction 12 33 - -
Seca12g01828 363 MobiDBLite consensus disorder prediction 1 67 - -
Seca12g01828 363 MobiDBLite consensus disorder prediction 293 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01828 Seca-Chr12 20896574 20897665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01828 91 348 TCP Transcription Factor Family AT2G45680 48.110 3.39e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca12g01828 TCP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01828 - - gmx:100797827 397.897