Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01800 ATGGGTTTTGATGATTTCACCAACAAGGATGATGAAGGTCCACTTCCAGGGTTCCGATTCCACCCCACAGATGAAGAACTTGTAGGTTTCTATCTTCGCCGAAAGCTTGACAAGAAACCCATTAGCCTCGAACTCATCAAACAGATCGATATATACAAATATGATCCATGGGATCTTCCAAGTCCATGCATGTTGCAAATTTTAATAATTTGTTTGTATATATATATATATGCAGAAAGCAGTACTAGTGGTGGGGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTACAGGAATAGCATAAGGCCCAATAGGGTGACTGGCTCAACCAGTGAAACTCAAACATGA 354 0.4068 MGFDDFTNKDDEGPLPGFRFHPTDEELVGFYLRRKLDKKPISLELIKQIDIYKYDPWDLPSPCMLQILIICLYIYIYAESSTSGGEKEWYFFCKRGRKYRNSIRPNRVTGSTSETQT. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01800 117 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 111 - -
Seca12g01800 117 Gene3D NAC domain 23 117 IPR036093 GO:0003677|GO:0006355
Seca12g01800 117 ProSiteProfiles NAC domain profile. 14 117 IPR003441 GO:0003677|GO:0006355
Seca12g01800 117 SUPERFAMILY NAC domain 12 111 IPR036093 GO:0003677|GO:0006355
Seca12g01800 117 Pfam No apical meristem (NAM) protein 16 110 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01800 Seca-Chr12 20432264 20433018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01800 15 111 NAC Transcription Factor Family AT1G26870 60.825 6.20e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g01800 NAM 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01800 - - sind:105175173 152.525