Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g01800 | ATGGGTTTTGATGATTTCACCAACAAGGATGATGAAGGTCCACTTCCAGGGTTCCGATTCCACCCCACAGATGAAGAACTTGTAGGTTTCTATCTTCGCCGAAAGCTTGACAAGAAACCCATTAGCCTCGAACTCATCAAACAGATCGATATATACAAATATGATCCATGGGATCTTCCAAGTCCATGCATGTTGCAAATTTTAATAATTTGTTTGTATATATATATATATGCAGAAAGCAGTACTAGTGGTGGGGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTACAGGAATAGCATAAGGCCCAATAGGGTGACTGGCTCAACCAGTGAAACTCAAACATGA | 354 | 0.4068 | MGFDDFTNKDDEGPLPGFRFHPTDEELVGFYLRRKLDKKPISLELIKQIDIYKYDPWDLPSPCMLQILIICLYIYIYAESSTSGGEKEWYFFCKRGRKYRNSIRPNRVTGSTSETQT. | 118 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g01800 | 117 | PANTHER | PROTEIN CUP-SHAPED COTYLEDON 2-RELATED | 14 | 111 | - | - | |
Seca12g01800 | 117 | Gene3D | NAC domain | 23 | 117 | IPR036093 | GO:0003677|GO:0006355 | |
Seca12g01800 | 117 | ProSiteProfiles | NAC domain profile. | 14 | 117 | IPR003441 | GO:0003677|GO:0006355 | |
Seca12g01800 | 117 | SUPERFAMILY | NAC domain | 12 | 111 | IPR036093 | GO:0003677|GO:0006355 | |
Seca12g01800 | 117 | Pfam | No apical meristem (NAM) protein | 16 | 110 | IPR003441 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g01800 | Seca-Chr12 | 20432264 | 20433018 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g01800 | 15 | 111 | NAC Transcription Factor Family | AT1G26870 | 60.825 | 6.20e-36 | 125 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NAC | Seca12g01800 | NAM | 1.4e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g01800 | - | - | sind:105175173 | 152.525 |