Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01770 ATGGAATCATTTGATGAGTCAAGTTACTCACGTTCATCATCGGAAACGAGCTCCTCTAACCCTCCAAACAGTCACTCAGATGAAGAAATCATATTAGCATCTTCGCGGCCAAAGAAGCGTGCGGGGCGTCGAATATTCAAGGAGACGAGGCACCCCGTGTACCGAGGAGTGAGAAGAAGGAACAACAACAAGTGGGTTTGTGAGGTGCGTGTTCCTAACGACAAGTCCACGAGGATTTGGCTTGGAACCTACCCAACGCCTGAGATGGCGGCACGTGCACACGACGTTGCAGCCCTCGCGCTTCGGGGAAAATCAGCTTGCCTCAACTTCGCTGACTCAGCATGGCGGTTACGATTACCAGCGTCGACTAATGCGAAAGAGATAAGGCGCGTGGCGGCAGAGGCTGCTGAGGCATTTGCTGTTGAGGACAGTTGTAACAAACAAGTAACTGATTGTGAGGTTTGCAGCAGCGATAGCATTGGAGTCAGCGTCGTGGAAGAAGAAGATGATGCTACTAACAATAAACCTTTGCAGGGACTGTGTGTTGAAGTTCCACGTGTGTCAGCATTTGAGGAGCAGGAACTGCGTGATTGGATTCGGAGTATGGCGGATGAGCCTTTAAGATCTCCGCTTCCTTTTGTAAGATATGGCAGAGAGTGGAACGATGTGGAAGTTGCGGATGCTGAGGTGTCGTTGTGGAGTTTTACCATCTGA 714 0.5028 MESFDESSYSRSSSETSSSNPPNSHSDEEIILASSRPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLRLPASTNAKEIRRVAAEAAEAFAVEDSCNKQVTDCEVCSSDSIGVSVVEEEDDATNNKPLQGLCVEVPRVSAFEEQELRDWIRSMADEPLRSPLPFVRYGREWNDVEVADAEVSLWSFTI. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01770 237 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Seca12g01770 237 SUPERFAMILY DNA-binding domain 53 113 IPR016177 GO:0003677
Seca12g01770 237 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Seca12g01770 237 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Seca12g01770 237 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Seca12g01770 237 MobiDBLite consensus disorder prediction 1 43 - -
Seca12g01770 237 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Seca12g01770 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 234 IPR045277 GO:0003700
Seca12g01770 237 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Seca12g01770 237 FunFam Ethylene-responsive transcription factor 2 52 112 - -
Seca12g01770 237 MobiDBLite consensus disorder prediction 1 30 - -
Seca12g01770 237 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01770 Seca-Chr12 19951240 19951953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01770 26 139 AP2-EREBP Transcription Factor Family AT1G12610 74.561 2.27e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g01770 AP2 7.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01770 - - pvu:PHAVU_003G212800g 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01770 12 19951240 19951953 Seca12g01770 12 19951240 19951953 ECH
Seca12g01770 12 19951240 19951953 Seca10g00382 10 3349462 3350193 PCT