Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01769 ATGGCCTCTTCTTCTTCTTCATCTTCTAGAAGGCACCCAGTGTACCATGGAATCCGTTGTCGTGGAGGAAAATGGGTAACTGAAATCCGTGAGCCACGTAAGACAAGTCGCATATGGCTGGGCACATTCCCCACTCCGGAAATGGCGGCCGCTGCCTATGACGTGGCAGCGTTGGCTCTCAAAGGAGGGGAAGCGGTTCTCAACTTCCCTGATTCAGTTGAAAAGTATCCAATTCCTGCATCCAAATCCCCTGCTGATATCCGTACTGCTGCAACTGCTGCAGCTCAACTAATGAAGCCTCAATCCTCAAGCCACAACGAATCTACGAATGACACAGTACTTCATCATGAGCCTTATGGTGGTGGTGGTGGTTATCCTTTTTCTGAAACTGAGTTCCTTGATGAGGAAGCCATATTCTCCATGCCAAGTTTGCTTGTTGAAATGGCTGAGGGAATGTTGCTCTCCCCGCCCAGAATCAGCCCCACACAGTATGATGATAACTCGCCTGAAAATTATGGTGGAGAAACTTTGTGGAACTATTTTTGA 546 0.4817 MASSSSSSSRRHPVYHGIRCRGGKWVTEIREPRKTSRIWLGTFPTPEMAAAAYDVAALALKGGEAVLNFPDSVEKYPIPASKSPADIRTAATAAAQLMKPQSSSHNESTNDTVLHHEPYGGGGGYPFSETEFLDEEAIFSMPSLLVEMAEGMLLSPPRISPTQYDDNSPENYGGETLWNYF. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01769 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 180 IPR045277 GO:0003700
Seca12g01769 181 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Seca12g01769 181 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Seca12g01769 181 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Seca12g01769 181 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Seca12g01769 181 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Seca12g01769 181 ProSiteProfiles AP2/ERF domain profile. 1 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01769 Seca-Chr12 19858032 19858577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01769 9 180 AP2-EREBP Transcription Factor Family AT5G52020 55.801 7.96e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g01769 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01769 - - gmx:100793589 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01769 12 19858032 19858577 Seca12g01769 12 19858032 19858577 ECH
Seca12g01769 12 19858032 19858577 Seca10g00378 10 3327741 3328295 PCT