Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01757 ATGGGAAAGGCCTCAAGGTGGTTTCGGGGGCTTCTCGGTCTGAGAAAATCAGACTGTGACTCTGCTCGGAAACCACCGAAAGAGAAACGACGATGGAGCTTCGTCAAATCTTACAGAGAAGAAGAACACCGAACAGAAATAGAACACAGAAACCATGTAATCGATAACGCTACGGTCACCTTCACACCAGAACGCGTGGACAACAAGCAAGCCATCGCAGTCGCTGCGGCCACTGCTGCGGCGGCAGGGGCGGCCGTCGCTGCCGCTCAAGCGGCTGCCGCCGTCGTCAAACTCACAAGCACAAACACAAACACCGGAATCAGGATCCGTCAGGAGTGGGCGGCCGTTAAGATCCAAGCCGCATTTCGAGGCTGTTTGGCAAGGAAAGCGCTGCGAGCGTTAAAAGGGCTGGTGAAACTCCAAGCAATAGTGAGAGGTCACATTGAGAGGAAGAGAACAGCAGAGTGGCTGAGAAAAATGCAATCAACACTGTTACGAGCACAGGCACGAGCTAGTGCAGTGCGGACCCTGCAGACCTCATATTCCAGTGCAAAGTCATCTACGTGCCATGACTATTCACAGGGTCCAGCAACACCAGAAAAATTTGAAAGCCCTGTCAGATCTAAGAGCATGAAATATGAGCAGTCACCTGTACTCAAGAGAAATGGCTCCAAATCCTGTGTCCTGATCAATGGCAATCAAGAGAGTCATTTAGATGAACAATCATGGAATAAGATAAGATCATTGACAAGAACTTATAGCCGGAATGATGAAAAAAGTGATAGGATTCTTGAAATTGATTCTGGAAAACCACACTTCACATCAAAACGTAGAAGCCTCTTTTACTCCACCAGTGATGCTTTCGGTTCTGATCATTACTATAGCAATAGTTTGACCACCACCACAAAGGAGTCAACATCTGGTCAGAGTCTATCTTGTGAAGTTCAGTCTAACAGCCCACTAAAATTCAAGGAGGTTGAGGAGAGCCCCTTCTGCACTGCCGACAATAGTCCTCAATATTTATCTGCCACCTCAAAAGATGATGGCTCCAAAAAAAGTCCTTTTACTCCTACTAGGAGTGATGGTTCAAGAAGCTACCTTCGTGGTTATGACTACCCAAGTTACATGGCATACACCGAATCATCAAAGGCAAAGGTCAGATCTCTCAGTGCCCCAAAACAGAGGCCACAGTATGAGAAGTCTGGTTCATCTAATAGGTACTCACTTAATGGATTTGACGGGTCAAGATTTGCCACACAGAAGACATCTGCTACATTGCATGCAAGCTTCACCAGCAAAGCTTATCCAGGTTCTGGTCGTTTGGACAAGCTTGGAATGCCTGTGGGGTATAGATACTGA 1359 0.4717 MGKASRWFRGLLGLRKSDCDSARKPPKEKRRWSFVKSYREEEHRTEIEHRNHVIDNATVTFTPERVDNKQAIAVAAATAAAAGAAVAAAQAAAAVVKLTSTNTNTGIRIRQEWAAVKIQAAFRGCLARKALRALKGLVKLQAIVRGHIERKRTAEWLRKMQSTLLRAQARASAVRTLQTSYSSAKSSTCHDYSQGPATPEKFESPVRSKSMKYEQSPVLKRNGSKSCVLINGNQESHLDEQSWNKIRSLTRTYSRNDEKSDRILEIDSGKPHFTSKRRSLFYSTSDAFGSDHYYSNSLTTTTKESTSGQSLSCEVQSNSPLKFKEVEESPFCTADNSPQYLSATSKDDGSKKSPFTPTRSDGSRSYLRGYDYPSYMAYTESSKAKVRSLSAPKQRPQYEKSGSSNRYSLNGFDGSRFATQKTSATLHASFTSKAYPGSGRLDKLGMPVGYRY. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01757 452 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Seca12g01757 452 PANTHER IQ-DOMAIN 5-RELATED 1 410 - -
Seca12g01757 452 Gene3D - 109 163 - -
Seca12g01757 452 MobiDBLite consensus disorder prediction 334 363 - -
Seca12g01757 452 MobiDBLite consensus disorder prediction 386 406 - -
Seca12g01757 452 MobiDBLite consensus disorder prediction 334 364 - -
Seca12g01757 452 Pfam IQ calmodulin-binding motif 138 152 IPR000048 GO:0005515
Seca12g01757 452 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Seca12g01757 452 Pfam Protein of unknown function (DUF4005) 337 410 IPR025064 -
Seca12g01757 452 SMART iq_5 110 132 IPR000048 GO:0005515
Seca12g01757 452 SMART iq_5 133 154 IPR000048 GO:0005515
Seca12g01757 452 MobiDBLite consensus disorder prediction 185 217 - -
Seca12g01757 452 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01757 Seca-Chr12 19553763 19558187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01757 112 452 IQD Protein Family AT4G23060 45.480 1.24e-66 219