Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01756 ATGGCATCGTCATCGTCAACCAATAGCGTCAGCTACGATGTGCCATGGGTAGAGAAGTACCGACCCAACAAGGTCGCTGACATCGTTGGCAACGAAGACGCCGTCTCTAGGCTCCAAATCATCGCTCGTGATGGCAACATGCCAAACCTCATTTTATCTGTAGGTCCTCCTGGAACTGGGAAAACCACTAGTATACTGGCCCTTGCACATGAGCTTCTAGGACCCAATTGCAAGGAAGCAGTTCTGGAACTAAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTAACACTGCCTCCTGGGCGACACAAAATAGTTATACTGGATGAAGCTGACAGCATGACATCAGGAGCACAGCAAGCTTTGAGAAGGACAATGGAGATATATTCTAATTCTACTCGATTTGCTCTTGCTTGTAACACATCGGCGAAGATTATTGAGCCGATTCAGAGTAGATGTGCCATTGTGAGGTTTTCGCGATTATCTGATCAAGAGATACTAGGCCGCCTCATGGTTGTTGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGATGGTGACATGAGGCAGGCGTTGAATAATTTACAAGCAACATACAGTGGGTTCCAGTTCGTCAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGAAATGTGATTGAAGGGAATTTTGATGAGGCATGTGTGGGGCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACACTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACATGAAACTAGAATTCATGAAGGAAACTGGATTTGCTCACATGAGAATTTGTGACGGAGTTGGTTCTTATCTTCAGCTGTGTGGCCTATTAGCTAAGCTTTCTCTAGTTCGTGAAACTGCTAAAGCTGCATGA 1002 0.4411 MASSSSTNSVSYDVPWVEKYRPNKVADIVGNEDAVSRLQIIARDGNMPNLILSVGPPGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACVGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAA. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01756 333 CDD HLD_clamp_RFC 172 234 - -
Seca12g01756 333 CDD AAA 29 167 - -
Seca12g01756 333 FunFam Replication factor C subunit 4 8 172 - -
Seca12g01756 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 15 317 - -
Seca12g01756 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Seca12g01756 333 Gene3D - 173 236 - -
Seca12g01756 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677|GO:0006260
Seca12g01756 333 Pfam ATPase family associated with various cellular activities (AAA) 52 169 IPR003959 GO:0005524|GO:0016887
Seca12g01756 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 234 IPR027417 -
Seca12g01756 333 FunFam replication factor C subunit 2 237 329 - -
Seca12g01756 333 Gene3D - 237 329 - -
Seca12g01756 333 FunFam Replication factor C subunit 4 173 236 - -
Seca12g01756 333 Gene3D - 7 172 IPR027417 -
Seca12g01756 333 SMART AAA_5 47 173 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01756 Seca-Chr12 19547371 19551250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01756 12 332 Core DNA Replication Machinery Family AT1G63160 92.212 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01756 K10755 - gmx:100781364 620.928