Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01755 ATGCGTTTTTATAATTTTTTTCCAAGCAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTTATTGGATTTTATTGGGTATCTGCTGATGGTCAAGCTTTGGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCATTTTCTGTGTTGCACTGGCATGCATCATTGGCATCGCTGTTTGCTGTTGTCTTCCGTGTATCATTGCACTTCTGTATGCAGTTGCAGACCAGGAAGGGGCAACGAAAGAAGACCTTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTAATGAGAAACTTGCTGGTAGTACACAAGGACCTGTTGGAGGAATAATGACTGAATGCCATACTGATACTCCAATTGAACATGTGCTTTCTGATGAGGATGCGGAATGTTGTATCTGCCTTTCTGCTTATGAAGATGGGGTTGAACTGAGACAACTTCCTTGCGGTCACCATTTTCACTGTACCTGCGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAATATAACATCTTGAAAAGCAGCAGCCATGGTCAAGAGGAAGTTTAG 618 0.411 MRFYNFFPSSMAKHLESANTMFSFIWWVIGFYWVSADGQALVQDSPQLYWLCIVFLGFDVFFVIFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDLEQLSKFKFQRKSNEKLAGSTQGPVGGIMTECHTDTPIEHVLSDEDAECCICLSAYEDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSSSHGQEEV. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01755 205 PANTHER TARGET OF ERK KINASE MPK-1 9 196 - -
Seca12g01755 205 FunFam E3 ubiquitin-protein ligase At1g12760 136 201 - -
Seca12g01755 205 Pfam Ring finger domain 149 191 IPR001841 -
Seca12g01755 205 SUPERFAMILY RING/U-box 139 197 - -
Seca12g01755 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 204 IPR013083 -
Seca12g01755 205 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Seca12g01755 205 SMART ring_2 150 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01755 Seca-Chr12 19531878 19535949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01755 13 200 C3H Transcription Factor Family AT1G68070 57.592 9.06e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01755 - - qsu:111999490 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01755 12 19531878 19535949 Seca12g01755 12 19531878 19535949 ECH
Seca12g01755 12 19531878 19535949 Seca10g00363 10 3198404 3201332 PCT