Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01747 ATGGCGTCCTTGCAGCACACCACAGCTTCACTTCAATCCAAACACATCCCTAGAAACATCCTCACCCATAAACCCACACCCATCCTCAACCTCTCTCTCCCCGGCACCTCCTTCACCTCTCTCAAGCTCAAATTCTCCCTCACCGGCGGAAACATCACCACTCGCCGCTCCAACGGCGCTCTCGGAGCCAGAATGTCCGCCACCGCCGCCGCCAGCTACGCCTCCGCCCTCGCCGAAGTTTCCAACACCAACAACACCCTCGACGCGACCACCGCCGACGTCGAGAAAATCGAGGAAATCTTCTCTGACCCTCAGGTGTTCGACTATTTCTCCAACCCAACGATCGAAATCGCGCAGAAGCGCAAGCTCATCGACGACATTGCCACGTCATCGGAGTTTCAACCTCACACCAGAAACTTCCTCTACATCTTGGTGGACGCGCAGAGGATTGAACTCATCAACGAGATAGCGAAGGAGTTTGAGTTGGTCTATAACACGTTGACTGATACGGAGCTTGCGGTTGTGACTTCGGTGGTGAAATTGGAGTCGCAGCATTTGGCGCAGATCGCGAAGCAAGTGCAGAAACTCACTGGGGCTAAAAATGTGAGGATCAAGACCGTGCTTGATGCTAGTTTGGTTGCTGGTTTCACTGTCAGGTATGGGAATTCAGGGTCTAAGTTGATTGACATGAGTGTCAAGAAACAATTAGAGGAAATTGCTGCTCAGCTTGAGTTGGGTGATATTCAACTCGCTGTATGA 759 0.5217 MASLQHTTASLQSKHIPRNILTHKPTPILNLSLPGTSFTSLKLKFSLTGGNITTRRSNGALGARMSATAAASYASALAEVSNTNNTLDATTADVEKIEEIFSDPQVFDYFSNPTIEIAQKRKLIDDIATSSEFQPHTRNFLYILVDAQRIELINEIAKEFELVYNTLTDTELAVVTSVVKLESQHLAQIAKQVQKLTGAKNVRIKTVLDASLVAGFTVRYGNSGSKLIDMSVKKQLEEIAAQLELGDIQLAV. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01747 252 Gene3D - 69 161 IPR026015 -
Seca12g01747 252 PANTHER ATP SYNTHASE DELTA CHAIN 60 244 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 Hamap ATP synthase subunit delta [atpD]. 65 245 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 NCBIfam ATP synthase F1 subunit delta 70 243 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 202 221 IPR020781 GO:0015986|GO:0016020|GO:0046933
Seca12g01747 252 Pfam ATP synthase delta (OSCP) subunit 70 243 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 PRINTS ATP synthase delta subunit signature 149 163 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 PRINTS ATP synthase delta subunit signature 200 215 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 PRINTS ATP synthase delta subunit signature 218 236 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 PRINTS ATP synthase delta subunit signature 69 88 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 PRINTS ATP synthase delta subunit signature 138 149 IPR000711 GO:0015986|GO:0046933
Seca12g01747 252 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 66 168 IPR026015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01747 Seca-Chr12 19336938 19337696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01747 1 251 Primary Pumps ATPases AT4G09650 61.753 1.06e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01747 K02113 - gmx:100819224 353.599