Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01744 ATGAACATGGCCGTAGAAGATTGCGTTCTTGGATGCCTTAGGCGTAACATGATTTTGGTAGTAGCAGTAGCGTGGTTGCTCAACTTGAACACCGTTTTTGCCTTTGCTCACATTCATGGATTTGGAGAGCAACCACTCTCCAAAATCGCCATCCACAAAGCCGTTGTTTCACTCCACAGTAGCGCCTCCGTTACAGCTACCCCTTCTCTTCTCGGCACAAAGGGGGAGGATACCCAATGGGTGACTGTAGATATTGATTACCCTGACCCATCAGCAGATGATTGGGTGGGAGTTTTCTCTCCAGCAGAGTTCAATGGCAGTTCATCAACCTGTCCACCTGTAAATGATCCAAAAGAACAGACTCCGTACATATGCTCAGCCCCAATAAAGTACAAGTTTGTAAATTACTCAAACTCACACTATACGAAGACAGGAAAAGCTTCCTTGAAGTTCCAATTGATCAATCAACGTGCAGATTTCTCCTTTGCGCTATTTTCAGGCGGACTATCAAATCCTAAACTTGTAGCAGTTTCCAATTTCATATCATTTGTCAATCCTAAAGTGCCTCTATATCCACGCCTCGCTCAAGGAAAGGCTTGGGATGAAATGACAGTTACCTGGACAAGTGGATATCACATAAATGAAGCTACTCCGTTTGTTGAGTGGGGTCTTAAGGGAAAAACGCCAGTGCAATCTCCTGCTGGAACATTGACATTTGATCATAACAGCATGTGTGGTTCACCTGCACGAACTGTTGGTTGGCGTGACCCTGGTTTCATACACACAAGTTTCCTCAAAAATCTGTGGCCAAATTTAGTGTATACATACCGAGTTGGGCATCTTTTGTCCAATGGTTCATATATTTGGAGCAAGAAATATTCATTCAAGTCATCACCTTATCCTGGACAAGACTCACTGCAACGTGTTGTCATATTTGGTGACATGGGGAAGGCCGAGCGAGATGGTTCAAATGAGTACAGTGACTATCAACCTGGTTCACTTAACACCACTGACCAGCTCATCAAGGATTTAAAAAATATTGACATTGTTTTCCACATAGGAGATATAACATATGCAAACGGATACATCTCACAGTGGGACCAGTTCACAGCTCAAGTGGAACCAATTGCATCAACAGTGCCATATATGATCGCCAGTGGTAATCATGAACGTGATTGGCCCAACACAGGCTCATTTTATAACACTACAGATTCAGGCAGCGAATGTGGAGTTTTGGCCGAGACCATGTTTTATGTTCCAGCTGAAAATAGAGCAAAGTTTTGGTATGCGACAGATTATGGCATGTTTCGCTTCTGTATAGCTGACACTGAACATGATTGGAGAGAAGGATCAGAACAGTACAAATTCATTGAGCATTGCCTAGCAACAGTAGACAGACAAAAGCAACCCTGGTTGATCTTTGCTGCTCATCGTGTGCTTGGATATTCCTCTGATTTTTGGTATGGGTTGAAGGGGTCATTTGAAGAGCCAATGGGAAGGGAAAGTTTGCAGAGACTTTGGCAGAAATATAAAGTGGACATTGCATTTTATGGCCATGTCCATAACTACGAACGGACATGCCCCATTTATCAGAATCAATGTGTGAATACAGAAAGGTCTCATTATTCTGGCATTGTGGATGGAACAATTCATGTTGTTGTTGGAGGGGCAGGAAGCCATTTGTCGAATTTCAGCCAAGTAACACCAAAGTGGAGTCTTTACAGAGACTATGACTTTGGGTTTGTCAAGTTAACGGCATTCAATCATTCATCTCTCCTCTTTGAGTACAAGAAAAGTAGTGATGGAAAGGTCTATGATTCTTTTACCATTTCAAGGGCTTACAAAGATGTCTTGGCCTGTGTGCATGATGGTTGTGAAGCAACCACTTTAGCATCTTGA 1899 0.4286 MNMAVEDCVLGCLRRNMILVVAVAWLLNLNTVFAFAHIHGFGEQPLSKIAIHKAVVSLHSSASVTATPSLLGTKGEDTQWVTVDIDYPDPSADDWVGVFSPAEFNGSSSTCPPVNDPKEQTPYICSAPIKYKFVNYSNSHYTKTGKASLKFQLINQRADFSFALFSGGLSNPKLVAVSNFISFVNPKVPLYPRLAQGKAWDEMTVTWTSGYHINEATPFVEWGLKGKTPVQSPAGTLTFDHNSMCGSPARTVGWRDPGFIHTSFLKNLWPNLVYTYRVGHLLSNGSYIWSKKYSFKSSPYPGQDSLQRVVIFGDMGKAERDGSNEYSDYQPGSLNTTDQLIKDLKNIDIVFHIGDITYANGYISQWDQFTAQVEPIASTVPYMIASGNHERDWPNTGSFYNTTDSGSECGVLAETMFYVPAENRAKFWYATDYGMFRFCIADTEHDWREGSEQYKFIEHCLATVDRQKQPWLIFAAHRVLGYSSDFWYGLKGSFEEPMGRESLQRLWQKYKVDIAFYGHVHNYERTCPIYQNQCVNTERSHYSGIVDGTIHVVVGGAGSHLSNFSQVTPKWSLYRDYDFGFVKLTAFNHSSLLFEYKKSSDGKVYDSFTISRAYKDVLACVHDGCEATTLAS. 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01744 632 PANTHER PURPLE ACID PHOSPHATASE-RELATED 33 615 - -
Seca12g01744 632 Pfam Calcineurin-like phosphoesterase 308 523 IPR004843 GO:0016787
Seca12g01744 632 CDD MPP_PAPs 307 612 IPR041792 -
Seca12g01744 632 Gene3D - 189 301 - -
Seca12g01744 632 SUPERFAMILY Metallo-dependent phosphatases 307 612 IPR029052 -
Seca12g01744 632 Pfam Fn3-like domain from Purple Acid Phosphatase 64 185 IPR040974 -
Seca12g01744 632 Pfam Iron/zinc purple acid phosphatase-like protein C 548 607 IPR025733 -
Seca12g01744 632 Pfam Purple acid Phosphatase, N-terminal domain 194 296 IPR015914 GO:0003993|GO:0046872
Seca12g01744 632 SUPERFAMILY Purple acid phosphatase, N-terminal domain 166 299 IPR008963 GO:0003993|GO:0046872
Seca12g01744 632 Gene3D - 302 616 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01744 Seca-Chr12 19267495 19273201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01744 55 632 Miscellaneous Gene Families AT2G03450 30.346 3.56e-64 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01744 K22390 - gmx:100814531 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01744 12 19267495 19273201 Seca12g07031 12 162202398 162207292 ECH
Seca12g01744 12 19267495 19273201 Seca12g01744 12 19267495 19273201 ECH