Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01735 ATGGATGATGTAATGGAGGCTCTCTCCGGTGCGCATTTCTCCGGTTGGCATCCTTCAACGACGTCGTCTTCTTCTCCAATGCCAGCACCTTCTCATTCCCCTTTCGTGATCGGGGTCTCTGGTGGTACAGCATCAGGGAAAACCACGGTGTGTGACTTGATCATTCAACAACTGCAAGATCACAGAGTTGTGCTCGTTAGTCAGGATTCTTTCTACCGTGGATTGACAAATGATGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACCCTCAGCAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCAATATATGATTTTAAGCTCCACCAGAGATCTTCTGACAGATTCCGACAGGTCAATGCATCTGAGGTAATCATTCTAGAGGGTATATTGGTTTTTCATGAACAACGTGTTCGCAACATGATGAACATGAAGATATTTGTGGATGCAGATCCTGATGTAAGGCTTGCCCGCAGAATAAGACGTGATACTGTTGAGAGGGGTAGAGATGTACACTCTGTGCTGGAACAGTACGCAAAATTTGTTAAGCCTGCCTTCGATGACTTTATTCTTCCATCCAAAAAGTATGCCGATGTCATAATACCTCGTGGGGGAGAGAATCGTGTAGCAATCGACTTGATCGTTCAACATATCCGCACTAAGCTAGGCCAACATAACCTTTGTAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGAGAAATATCAAAGCATGACTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGTCTGTCTTCGGAAGGGGAAATTCCATTCTATCGTTTGAATCTGCCAGCAAGTGTTGCATTTATTTGTTTTAGCATAACATGA 993 0.424 MDDVMEALSGAHFSGWHPSTTSSSSPMPAPSHSPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPDAFDTEQLVETLSKLKSGQSVQVPIYDFKLHQRSSDRFRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGLSSEGEIPFYRLNLPASVAFICFSIT. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01735 330 CDD UMPK 36 234 IPR000764 -
Seca12g01735 330 PANTHER URIDINE KINASE 27 308 - -
Seca12g01735 330 NCBIfam uridine kinase 34 234 IPR000764 -
Seca12g01735 330 MobiDBLite consensus disorder prediction 15 30 - -
Seca12g01735 330 Gene3D - 31 237 IPR027417 -
Seca12g01735 330 ProSiteProfiles UvrC family, homology region profile. 122 223 IPR001162 GO:0009381
Seca12g01735 330 Pfam Uracil phosphoribosyltransferase 252 310 - -
Seca12g01735 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 227 IPR027417 -
Seca12g01735 330 FunFam Uridine kinase 31 237 - -
Seca12g01735 330 MobiDBLite consensus disorder prediction 15 34 - -
Seca12g01735 330 Gene3D - 238 325 IPR029057 -
Seca12g01735 330 Pfam Phosphoribulokinase / Uridine kinase family 36 222 IPR006083 GO:0005524|GO:0016301
Seca12g01735 330 PRINTS Uridine kinase signature 34 51 - -
Seca12g01735 330 PRINTS Uridine kinase signature 180 191 - -
Seca12g01735 330 PRINTS Uridine kinase signature 64 75 - -
Seca12g01735 330 PRINTS Uridine kinase signature 109 124 - -
Seca12g01735 330 PRINTS Uridine kinase signature 202 215 - -
Seca12g01735 330 PRINTS Uridine kinase signature 166 176 - -
Seca12g01735 330 SUPERFAMILY PRTase-like 249 311 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01735 Seca-Chr12 19109340 19115496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01735 1 309 PRT Gene Family AT5G40870 74.242 2.24e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01735 K00876 - gmx:100816209 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01735 12 19109340 19115496 Seca12g01735 12 19109340 19115496 ECH