Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01727 ATGGCTGGGCCATTTGAGATAGAGCCTATCACGGTGACCCATTCTATTCCTGATTGCTGTGGACTGGTTCTTCGCTGTTCTGATGGTACTATCCTTCACACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTGACTGGTAGAAAGCTGGTATTTGTTGGCATGTCTTTGAGGACATATTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTACGGAAGTAGTCATTCTTTCAAACTGACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTCATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAATGAATGCCTGCACACATCTGGTCATGGGTATCGTGGAGAATTAGAGGAAGTCCTTAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTTATTTCACTTGGAAAAGAGAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCAAGTGAACTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAGATATGCCGCCCTCAGAATTTAGACAGTTTTTCTGCAAACACTTTAAAAGGGAAGATTAGAATTACTACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAAGTGTCCACTGTCTCACATTGAAAGAATTGTGTCTGAAGTGTTGAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGAAGTTATTGCTATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTACTGAGATAAACACAAGGTTGTCTGGCAAATCCCATGCGTATGGGATATCAACATTGAGGAAAGTGGTGGATGGACTTGGGAAAGAAAATCAGTCCACCAGAATGCAAATGAGAGATGACGGTATTGATGTTAAAGGTCTACTACCTACAGAAGACGTCGCTTCCTCGAGTGGAGCTGAGGGTGATTTGTCTGTTACAGAGGATTCAGATGAATTTTGGAAAGCATTTGTTGAATCCTCAGCACTTGGGAAATCAATCAAATCTAACAATGGTTATGCTCCACAAAAGGAGAAGTACCAGGTGAAGAATGATGGTTCAGAAGACGCTGAAGAATGCAAGTCTGAAAATACATCAAGTACTGAAGCCAAATCTTCAACATCAGTAAAGAGAAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGCTGATTGGTATGCGCTGGGAACTGAATGACAGATTTCAAGTCGTAAAGGGAAGGATGGGCCTCTGGGAAGAAATATCTCAGACCTTGTTGGCTAATGGGATCAGCAGAAACCCTGGGCAGTGTAAATCTATGTGGACATCTTTGGTACAAAAATATGAGGAGGTTAAGAATGAGAAGGATGGAAAGAAAAGTTGGCCATATCTTGAGGACATGGAAAGGATTCTGTCTGATAATGAGGCACTAGCAAAAAAATGA 2010 0.4144 MAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLKIALDGIIVVSMEICRPQNLDSFSANTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKCPLSHIERIVSEVLRKMVRKYSGKRPEVIAIAIENPAAVLATEINTRLSGKSHAYGISTLRKVVDGLGKENQSTRMQMRDDGIDVKGLLPTEDVASSSGAEGDLSVTEDSDEFWKAFVESSALGKSIKSNNGYAPQKEKYQVKNDGSEDAEECKSENTSSTEAKSSTSVKRRNKWKEEEVKKLIGMRWELNDRFQVVKGRMGLWEEISQTLLANGISRNPGQCKSMWTSLVQKYEEVKNEKDGKKSWPYLEDMERILSDNEALAKK. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01727 669 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 235 273 IPR011108 -
Seca12g01727 669 Coils Coil 653 669 - -
Seca12g01727 669 ProSiteProfiles Myb-like domain profile. 570 634 IPR001005 -
Seca12g01727 669 MobiDBLite consensus disorder prediction 544 561 - -
Seca12g01727 669 MobiDBLite consensus disorder prediction 539 575 - -
Seca12g01727 669 Gene3D - 331 437 - -
Seca12g01727 669 PANTHER RIBONUCLEASE J 1 669 - -
Seca12g01727 669 Pfam Myb/SANT-like DNA-binding domain 575 659 IPR044822 -
Seca12g01727 669 SUPERFAMILY Metallo-hydrolase/oxidoreductase 3 293 IPR036866 -
Seca12g01727 669 Gene3D - 80 230 IPR042173 -
Seca12g01727 669 CDD GT1 576 641 - -
Seca12g01727 669 Gene3D - 578 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01727 Seca-Chr12 18993698 19010449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01727 577 661 Trihelix Transcription Factor Family AT2G38250 34.483 1.84e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca12g01727 Myb_DNA-bind_4 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01727 - - gmx:100814619 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01727 12 18993698 19010449 Seca4g02865 4 49440341 49460684 PCT