Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g01725 | ATGGCGGCAGGGCGAAAGAGTACTTTAAGGAGCAGGGAATCTTACAAATATAATTCCATCAAGGAATTTGATCACTGTAAGAATGTTTCTGCTGGCGTGGAAGTGGATGGTTTTCTTGGTGGAGAAGAGGAGAGAGAGGAAGGTGAGATCTTTGTTGAACATGGGGAATATGCACATGACCCAGGGTTTCAAGCTGTTGATGGGAAGGAAACTTTGCCACCGCCAGAGAAGAGGAGAAAAATTGATGTGCAAGGATGGAACATCACTATGTCAAGATGGGCTTGTGATGGTCTTTCACCAACAGGCACTGATGATAAATACAAGCAAGTCACAGGAACCTCAAGTCCTGAAGCTGATGAATCCCAAAGAGAATGTCCAGAGAGCACAATTACTAGATCATCAGGATCAGGAAGCAGCGGAAATTGTTCTCTGAGACTTTCTACGGAAGATACTGATTTTGACTTTATTGATGATGTTGAGGAAAGTGATTCGCCATCTTCTCATAGAGATGGTGGTTCAATGTATCCGCAGAGAAATATAAACATGCTTCAGAGCTGCAGAAGTGTACACGATTTTGAAATGATTAAAAAAATAAACGAAGGAACTTATGGTGTTGTCTATAAAGCCAAGGATAAGAAGACTGGAGAGATAGTAGCATTGAAAAAGGTGAAGATGAACATAGAGAGGGATGGTTTTCCAATGTCATCCTTAAGGGAAATAAACATTCTATTGTCTTTCAATCATCCCTTTATTGTGGATGTTAAGGAAGTAGTTGTGGATAATTATGATGGGACTTTCATGGTAATGGAGTACATGGAGCATGACTTGAAGGGACTTATGGAGCTTAAAAAACAACCTTTTAGTATGGGTGAAGTAAAATATATGATGCTTCAACTTCTTGAAGGTGTCAAGTATCTTCATGATAATTGGATTCTCCATAGGGACTTGAAGACATCAAATATTCTACTAAACAACAAAGGAGAGCTGAAAATATGTGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCATTGAAACCATATACTCCTATTGTGGTTACACTGTGGTATAGAGCACCTGAACTTTTATTAGGTGCTAAAAAATACTCAACAGCAATTGACATGTGGTCGGTGGGTTGCATAATGGCTGAATTAGTTGCCAAGGAGCCTCTGTTCAGGGGTAAAACCGAAATTGAACAACTTCATAAGATTTTTCAAACCCTGGGTACACCAGATGAGAAAATTTGGCCAGGATTATCTAAATTACCGGGGTCTAAAACAAATTTTGTTAAGCAACCGTATAATATGCTAAGTAAGAAGTTTCCAGCTGCATCTTTCACTGGTTCACCAGTTTTATCTGAGTTGGGATTTGACTTGATGAAGAAGCTTCTAACTTACGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGGTTGGTTCCGTGAAGCTCCACTTCCCAAATCTGATTTCAAGCCTGTTTTTTCTTGGCAGTGA | 1500 | 0.3993 | MAAGRKSTLRSRESYKYNSIKEFDHCKNVSAGVEVDGFLGGEEEREEGEIFVEHGEYAHDPGFQAVDGKETLPPPEKRRKIDVQGWNITMSRWACDGLSPTGTDDKYKQVTGTSSPEADESQRECPESTITRSSGSGSSGNCSLRLSTEDTDFDFIDDVEESDSPSSHRDGGSMYPQRNINMLQSCRSVHDFEMIKKINEGTYGVVYKAKDKKTGEIVALKKVKMNIERDGFPMSSLREINILLSFNHPFIVDVKEVVVDNYDGTFMVMEYMEHDLKGLMELKKQPFSMGEVKYMMLQLLEGVKYLHDNWILHRDLKTSNILLNNKGELKICDFGLSRQYGSPLKPYTPIVVTLWYRAPELLLGAKKYSTAIDMWSVGCIMAELVAKEPLFRGKTEIEQLHKIFQTLGTPDEKIWPGLSKLPGSKTNFVKQPYNMLSKKFPAASFTGSPVLSELGFDLMKKLLTYDPEKRITAEDALLHGWFREAPLPKSDFKPVFSWQ. | 500 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g01725 | 499 | MobiDBLite | consensus disorder prediction | 157 | 177 | - | - | |
Seca12g01725 | 499 | MobiDBLite | consensus disorder prediction | 127 | 143 | - | - | |
Seca12g01725 | 499 | Gene3D | Transferase(Phosphotransferase) domain 1 | 274 | 494 | - | - | |
Seca12g01725 | 499 | Pfam | Protein kinase domain | 192 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g01725 | 499 | ProSiteProfiles | Protein kinase domain profile. | 192 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g01725 | 499 | MobiDBLite | consensus disorder prediction | 104 | 119 | - | - | |
Seca12g01725 | 499 | FunFam | Cyclin-dependent kinase G-2 | 274 | 499 | - | - | |
Seca12g01725 | 499 | SMART | serkin_6 | 192 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g01725 | 499 | MobiDBLite | consensus disorder prediction | 97 | 143 | - | - | |
Seca12g01725 | 499 | FunFam | cyclin-dependent kinase G-2 isoform X1 | 177 | 273 | - | - | |
Seca12g01725 | 499 | Gene3D | Phosphorylase Kinase; domain 1 | 176 | 273 | - | - | |
Seca12g01725 | 499 | PANTHER | CELL DIVISION PROTEIN KINASE | 191 | 488 | - | - | |
Seca12g01725 | 499 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 311 | 323 | IPR008271 | GO:0004672|GO:0006468 | |
Seca12g01725 | 499 | SUPERFAMILY | Protein kinase-like (PK-like) | 185 | 488 | IPR011009 | - | |
Seca12g01725 | 499 | CDD | STKc_CDC2L1 | 186 | 482 | IPR045267 | GO:0004674|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g01725 | Seca-Chr12 | 18967809 | 18971075 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g01725 | 187 | 488 | Core Cell Cycle Gene Families | AT5G10270 | 46.855 | 1.67e-87 | 276 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-PITSLRE | Seca12g01725 | Pkinase | 6.1e-75 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g01725 | K08818 | - | gmx:100788840 | 640.958 |