Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01725 ATGGCGGCAGGGCGAAAGAGTACTTTAAGGAGCAGGGAATCTTACAAATATAATTCCATCAAGGAATTTGATCACTGTAAGAATGTTTCTGCTGGCGTGGAAGTGGATGGTTTTCTTGGTGGAGAAGAGGAGAGAGAGGAAGGTGAGATCTTTGTTGAACATGGGGAATATGCACATGACCCAGGGTTTCAAGCTGTTGATGGGAAGGAAACTTTGCCACCGCCAGAGAAGAGGAGAAAAATTGATGTGCAAGGATGGAACATCACTATGTCAAGATGGGCTTGTGATGGTCTTTCACCAACAGGCACTGATGATAAATACAAGCAAGTCACAGGAACCTCAAGTCCTGAAGCTGATGAATCCCAAAGAGAATGTCCAGAGAGCACAATTACTAGATCATCAGGATCAGGAAGCAGCGGAAATTGTTCTCTGAGACTTTCTACGGAAGATACTGATTTTGACTTTATTGATGATGTTGAGGAAAGTGATTCGCCATCTTCTCATAGAGATGGTGGTTCAATGTATCCGCAGAGAAATATAAACATGCTTCAGAGCTGCAGAAGTGTACACGATTTTGAAATGATTAAAAAAATAAACGAAGGAACTTATGGTGTTGTCTATAAAGCCAAGGATAAGAAGACTGGAGAGATAGTAGCATTGAAAAAGGTGAAGATGAACATAGAGAGGGATGGTTTTCCAATGTCATCCTTAAGGGAAATAAACATTCTATTGTCTTTCAATCATCCCTTTATTGTGGATGTTAAGGAAGTAGTTGTGGATAATTATGATGGGACTTTCATGGTAATGGAGTACATGGAGCATGACTTGAAGGGACTTATGGAGCTTAAAAAACAACCTTTTAGTATGGGTGAAGTAAAATATATGATGCTTCAACTTCTTGAAGGTGTCAAGTATCTTCATGATAATTGGATTCTCCATAGGGACTTGAAGACATCAAATATTCTACTAAACAACAAAGGAGAGCTGAAAATATGTGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCATTGAAACCATATACTCCTATTGTGGTTACACTGTGGTATAGAGCACCTGAACTTTTATTAGGTGCTAAAAAATACTCAACAGCAATTGACATGTGGTCGGTGGGTTGCATAATGGCTGAATTAGTTGCCAAGGAGCCTCTGTTCAGGGGTAAAACCGAAATTGAACAACTTCATAAGATTTTTCAAACCCTGGGTACACCAGATGAGAAAATTTGGCCAGGATTATCTAAATTACCGGGGTCTAAAACAAATTTTGTTAAGCAACCGTATAATATGCTAAGTAAGAAGTTTCCAGCTGCATCTTTCACTGGTTCACCAGTTTTATCTGAGTTGGGATTTGACTTGATGAAGAAGCTTCTAACTTACGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGGTTGGTTCCGTGAAGCTCCACTTCCCAAATCTGATTTCAAGCCTGTTTTTTCTTGGCAGTGA 1500 0.3993 MAAGRKSTLRSRESYKYNSIKEFDHCKNVSAGVEVDGFLGGEEEREEGEIFVEHGEYAHDPGFQAVDGKETLPPPEKRRKIDVQGWNITMSRWACDGLSPTGTDDKYKQVTGTSSPEADESQRECPESTITRSSGSGSSGNCSLRLSTEDTDFDFIDDVEESDSPSSHRDGGSMYPQRNINMLQSCRSVHDFEMIKKINEGTYGVVYKAKDKKTGEIVALKKVKMNIERDGFPMSSLREINILLSFNHPFIVDVKEVVVDNYDGTFMVMEYMEHDLKGLMELKKQPFSMGEVKYMMLQLLEGVKYLHDNWILHRDLKTSNILLNNKGELKICDFGLSRQYGSPLKPYTPIVVTLWYRAPELLLGAKKYSTAIDMWSVGCIMAELVAKEPLFRGKTEIEQLHKIFQTLGTPDEKIWPGLSKLPGSKTNFVKQPYNMLSKKFPAASFTGSPVLSELGFDLMKKLLTYDPEKRITAEDALLHGWFREAPLPKSDFKPVFSWQ. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01725 499 MobiDBLite consensus disorder prediction 157 177 - -
Seca12g01725 499 MobiDBLite consensus disorder prediction 127 143 - -
Seca12g01725 499 Gene3D Transferase(Phosphotransferase) domain 1 274 494 - -
Seca12g01725 499 Pfam Protein kinase domain 192 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01725 499 ProSiteProfiles Protein kinase domain profile. 192 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01725 499 MobiDBLite consensus disorder prediction 104 119 - -
Seca12g01725 499 FunFam Cyclin-dependent kinase G-2 274 499 - -
Seca12g01725 499 SMART serkin_6 192 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01725 499 MobiDBLite consensus disorder prediction 97 143 - -
Seca12g01725 499 FunFam cyclin-dependent kinase G-2 isoform X1 177 273 - -
Seca12g01725 499 Gene3D Phosphorylase Kinase; domain 1 176 273 - -
Seca12g01725 499 PANTHER CELL DIVISION PROTEIN KINASE 191 488 - -
Seca12g01725 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Seca12g01725 499 SUPERFAMILY Protein kinase-like (PK-like) 185 488 IPR011009 -
Seca12g01725 499 CDD STKc_CDC2L1 186 482 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01725 Seca-Chr12 18967809 18971075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01725 187 488 Core Cell Cycle Gene Families AT5G10270 46.855 1.67e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Seca12g01725 Pkinase 6.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01725 K08818 - gmx:100788840 640.958