Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01695 ATGTCTATGTCCCCTCCTCTTTATAGTGACTTCAAGGGTGAGCTCATGGATGAAAATCCAGTGTTTTTTCTTGATCTCTGCTCAATGGGTTCCCATTCCTATTCTCATCTTCCTATTTTTGATAGCAGTGATTCTAATTGGACCCTACCCTTTTCCAATGAAACCATCAGGGAAAACAAGAGAGTGAAGAGAACCATAGACATCCCCTTTTACTTTGGAAATTTTAGCAGCCACTCAAGCATTAGTAGTAACAGTAGCAGAGATAGCAGTTGCTATAGTTCCCTCAGCAGTGTGAATAGCATAACAAGGCTTCATTTCAGAGATCACATAAGGACTTATAAACAGAGATATCCTGCTGAAGCTGTTGAAGAGGCAGCTGAAGATATGCACAATTCTGAAATTGTTGGAACTGAAGAAGATGGATGTGCTGATGGAATGCTGAGGCTTGTTGAACTTTTAATTGCTTGTGCTGAAGCTGTTGCATGTCGTGACAAAGCACATGCTTCTGTATTATTATCTGAACTTAAAGCCAATGCTTTGGTATTTGGAACCTCATTCCAGAGAGTTGCATCTTGTTTTGTGCAAGGGCTAACTGAGAGGCTTACTCTGATTCAACCAATTGGACCTATTGGGGTAACACAATCCATGATGAACATTATGGATGCAGCATCTGAAGAAATGGAAGAAGCATTTAGATTGGTATATGAGATATGCCCACATATTCAATTTGGACACTTTGTGGCTAATGCTACAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACCTTGGCATGAGCCTTGGTCTTCCTCATGGCCATCAGTGGCGGGGACTGATCCAAAGCCTTGCTAACCGTACCAGCCACCGTGTACGGCGGCTCCGAATCACGGCGGTTGGTCTTTGCATTTCAAGACTCCAAACCATTGGTGAGGAACTCTCAGTTTATGCTAATAATTTGGGCATTCATTTGGAGTTCTCAGTGGTGCAAAAGAATTTGGAGAATTTGCAACCTGAAGATATAAAATTGAATGAGGAAGAGGTTCTTGTGGTGAATAGCATCCTTCAACTGCATTGTGTGGTTAAAGAAAGCCGTGGTGCTTTGAATTCTGTGCTGCAAATGATTCATAGGCTTTCACCAAAAGTTTTGGTGATGGTTGAGCAGGATTCTAGTCACAATGGACCTTTTTTTCTTGGGAGGTTTATGGAAGCATTGCACTATTACTCTGCTATTTTTGACTCATTGGATGTTATGTTGCCAAAGTATGACACTAAGAGGGCCAAAATAGAGCAGTTTTACTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGTCCATTGAGGATGGAGAGGCATGAGAAAGTTGATCAGTGGCGTAGGAGGATGAGCAGGGCAGGGTTTCAAGCTGCACCTATTAAGATGGTGGCTCAAGCTAAGCAGTGGCTTGTGAAGAACAAGGTTTGTGAAGGATATACAGTTGTGGAAGAGAAAGGGTGCTTGGTGCTTGGATGGAAATCAAGGCCAATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1566 0.424 MSMSPPLYSDFKGELMDENPVFFLDLCSMGSHSYSHLPIFDSSDSNWTLPFSNETIRENKRVKRTIDIPFYFGNFSSHSSISSNSSRDSSCYSSLSSVNSITRLHFRDHIRTYKQRYPAEAVEEAAEDMHNSEIVGTEEDGCADGMLRLVELLIACAEAVACRDKAHASVLLSELKANALVFGTSFQRVASCFVQGLTERLTLIQPIGPIGVTQSMMNIMDAASEEMEEAFRLVYEICPHIQFGHFVANATILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRTSHRVRRLRITAVGLCISRLQTIGEELSVYANNLGIHLEFSVVQKNLENLQPEDIKLNEEEVLVVNSILQLHCVVKESRGALNSVLQMIHRLSPKVLVMVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQAAPIKMVAQAKQWLVKNKVCEGYTVVEEKGCLVLGWKSRPIVAVSCWKC. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01695 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 146 515 IPR005202 -
Seca12g01695 521 Pfam GRAS domain family 149 520 IPR005202 -
Seca12g01695 521 ProSiteProfiles GRAS family profile. 140 520 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01695 Seca-Chr12 18425413 18428072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01695 147 520 GRAS Transcription Factor Family AT1G66350 36.939 2.34e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g01695 GRAS 8.5e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01695 - - gmx:100813548 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01695 12 18425413 18428072 Seca12g01695 12 18425413 18428072 ECH