Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01692 ATGCCTCCGTCTTCGACTCCTCAGTTCATCTCTCCTCCCTCCAACCAAGATGTAACCCGGGACGACGACTCTATTATAGGGGAAAGATTCATAACAAACTGGGATCCACTTCAGCCCCAATTACCATTTGTGAAAAGGAAACTGTGTCCTTCTGTTACAAATATATGGGAGATGACCTCTTCAACTTTCGAATGGTTGCCTAGTACGTGTGCCGACGTAGACTACCCACAACCACCGCATGAATACCAACATGGAAGTCCTTCTAACAACCACGTTCCTCGTCAAATCATGGGTGATCCAGGTCAGCCGTTATGGACACATAAGATTTCACAGTCAGAAGTCCGAGGGAGACAAGGATTGCTAATTCCTGTAAGGATTGTAAAACGATTACTCCACGAAGACCAAAACAAGATTAACGTTTGCCTACCAAATAATCGATTGGAGCCATGGAAGCTGCTTTGGAACAAGCAAATAAAAAATCATTGTAAACTGGGCCACGGATGGTATGGATTTTGCAGGGAGCATAATCTGCAAAAGGATGATGTTTTGAAATTCAGGCTATTGCACGATGAAACAACCATTCGAGTAGACTTCACCCGCAACAATGCATGA 612 0.4412 MPPSSTPQFISPPSNQDVTRDDDSIIGERFITNWDPLQPQLPFVKRKLCPSVTNIWEMTSSTFEWLPSTCADVDYPQPPHEYQHGSPSNNHVPRQIMGDPGQPLWTHKISQSEVRGRQGLLIPVRIVKRLLHEDQNKINVCLPNNRLEPWKLLWNKQIKNHCKLGHGWYGFCREHNLQKDDVLKFRLLHDETTIRVDFTRNNA. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01692 203 CDD B3_DNA 109 200 IPR003340 GO:0003677
Seca12g01692 203 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g01692 203 Pfam B3 DNA binding domain 109 201 IPR003340 GO:0003677
Seca12g01692 203 SUPERFAMILY DNA-binding pseudobarrel domain 99 198 IPR015300 -
Seca12g01692 203 Gene3D - 91 202 IPR015300 -
Seca12g01692 203 SMART B3_2 106 202 IPR003340 GO:0003677
Seca12g01692 203 ProSiteProfiles B3 DNA-binding domain profile. 105 202 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01692 Seca-Chr12 18396472 18397526 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca12g01692 B3 4.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01692 - K24769 lja:Lj6g3v0497350.1 57.3806