Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01674 ATGGAACCCTCTGAATCCGATTCAGTTGCTGTTTCCAATGGTGAAGACCCTCAATTGGGTTCTGAGAAGGCACCTTCTTCCCCTGGTGCCCTTCCTTCACCGCCAGATCTCAATCACACTGTCGAGGAGGAAGCACTTGGTGAGGAACTTCAGAACAAGTTGGATTTGAAGGATGAAGATGAAGGGGTCACTGAAACTGGGGAGAAAGTTGAGAAAGTTTCGGACTTTAACGATGGTGGACAAGTTTGCGATGAAGAACCCGCTAAGGGTGAAGTGTGTGATGAAGATAGCAGGGGTTGGGAGACCAATAGTTGGAATGAGAATGTGAATGAAGAGGTGGGTAGAGATGGAGATGTTGATGGGTATGTAGAAGGAGATGGAGATGTTGATGGGTATGGGTATGGGTATGGGGATGTTGATGGTGATGGAGTGGAGAAGAAGGAAGAGAAAAGCAGTGGTAGAACTCGCCACTACCCTTTGAGGCCTGAAGCTGAAGATTGTGCATTCTACATGAAGACTGGGACTTGCAAGTTTGGGTTCAATTGCAAGTTTAACCACCCCATTAGGAGGAAAAATCAGACTATTAAGGAGAAGACAGGAGAAAGAGAAGAACCAACAGAAAGATCAAGCCCAACAGAATGCAAGGTTATTGTCAAATTATGGCAGTATTATCAAAGGTCTGGTGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACCCCAAAGGAAAATCTTCAACAGCACCAATTTTAGAACTTAACTTTCTCGGCCTACCTATTCGTCTGGGGGAGAAAGAATGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGCAAGTTTAATCATCCTGACCCTACAGCTGTTGGAGGATGTGATCCTCCTTCAGGGTATGGTAATGGAGGGTCCATTTCATTACAAGGTGTATCACAATCATCTGTACCCTCCTGGTCCTCTCCAAGAACATTAAATGAAACATCTTTTGTGCCGATGATGGTTTCACCTGCTCAAGGAGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTATCTGAGAGAAGTATGCGTCCACCTTCTACATATGTCATGAACAATCCAGCAATTGAAACAAATATTTACATGCGCCATCAAAAGCAGATGCCAGTTGACGAGTTTCCAGAAAGGCCTGGAGAACCTGAATGCAACTACTTCTTAAAAACTGGGGATTGCAAGTATAAAGCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTCTTAGACCTGACCAGAATGTCTGCTCACACTATAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACTCAATGCCCTTAATGATGCCTGGACTTGGCCAGCAATCCTACACAAACTCATCTGATGTTGAGGTAGATGGACTGGGTGGAAGTGCAGGTGCAAGTGATGTGATGGTTCAGCAATCTGTGTAA 1533 0.4436 MEPSESDSVAVSNGEDPQLGSEKAPSSPGALPSPPDLNHTVEEEALGEELQNKLDLKDEDEGVTETGEKVEKVSDFNDGGQVCDEEPAKGEVCDEDSRGWETNSWNENVNEEVGRDGDVDGYVEGDGDVDGYGYGYGDVDGDGVEKKEEKSSGRTRHYPLRPEAEDCAFYMKTGTCKFGFNCKFNHPIRRKNQTIKEKTGEREEPTERSSPTECKVIVKLWQYYQRSGGCKFGKACKYNHPKGKSSTAPILELNFLGLPIRLGEKECPYYMRTGSCKFGSNCKFNHPDPTAVGGCDPPSGYGNGGSISLQGVSQSSVPSWSSPRTLNETSFVPMMVSPAQGVSPQSSDWNGYQAPVYLSERSMRPPSTYVMNNPAIETNIYMRHQKQMPVDEFPERPGEPECNYFLKTGDCKYKANCKFHHPKNRVARLPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPINSMPLMMPGLGQQSYTNSSDVEVDGLGGSAGASDVMVQQSV. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01674 510 Gene3D - 441 488 - -
Seca12g01674 510 Gene3D - 382 429 - -
Seca12g01674 510 Gene3D - 218 294 - -
Seca12g01674 510 SUPERFAMILY CCCH zinc finger 401 425 IPR036855 GO:0046872
Seca12g01674 510 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Seca12g01674 510 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Seca12g01674 510 SMART c3hfinal6 220 242 IPR000571 GO:0046872
Seca12g01674 510 SMART c3hfinal6 442 469 IPR000571 GO:0046872
Seca12g01674 510 SMART c3hfinal6 396 423 IPR000571 GO:0046872
Seca12g01674 510 MobiDBLite consensus disorder prediction 1 15 - -
Seca12g01674 510 ProSiteProfiles Zinc finger C3H1-type profile. 442 470 IPR000571 GO:0046872
Seca12g01674 510 SUPERFAMILY CCCH zinc finger 262 288 IPR036855 GO:0046872
Seca12g01674 510 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Seca12g01674 510 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Seca12g01674 510 MobiDBLite consensus disorder prediction 41 101 - -
Seca12g01674 510 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Seca12g01674 510 MobiDBLite consensus disorder prediction 1 122 - -
Seca12g01674 510 PANTHER PROTEIN PHOSPHATASE RELATED 51 481 - -
Seca12g01674 510 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Seca12g01674 510 Gene3D - 139 199 - -
Seca12g01674 510 MobiDBLite consensus disorder prediction 140 157 - -
Seca12g01674 510 MobiDBLite consensus disorder prediction 134 157 - -
Seca12g01674 510 ProSiteProfiles Zinc finger C3H1-type profile. 396 424 IPR000571 GO:0046872
Seca12g01674 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 445 468 IPR000571 GO:0046872
Seca12g01674 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 187 IPR000571 GO:0046872
Seca12g01674 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 222 242 IPR000571 GO:0046872
Seca12g01674 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 287 IPR000571 GO:0046872
Seca12g01674 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 398 423 IPR000571 GO:0046872
Seca12g01674 510 SUPERFAMILY CCCH zinc finger 440 468 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01674 Seca-Chr12 18280825 18284724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01674 388 484 C2H2 Transcription Factor Family AT3G02830 33.566 6.43e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g01674 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01674 - - gmx:100786894 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01674 12 18280825 18284724 Seca4g02912 4 50150179 50151363 ECH
Seca12g01674 12 18280825 18284724 Seca12g01674 12 18280825 18284724 ECH
Seca12g01674 12 18280825 18284724 Seca4g02912 4 50150179 50151363 PCT