Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01673 ATGGCGGGTTCGGAGGAGGTTTTCCCGTGGTTGAAATCGCTTCCGGTGGCGCCGGAGTATCGGCCGAGCGCGGCGGAGTTCCAAGATCCGATCGGTTACATTTTTAAGATCGAGAAAGAAGCATCAAAATACGGAATCTGTAAGATTATTCCTCCTGTTCCCCCTTCCCCTAAGAAAACCGCAATTTCGAACCTGAACCGGTCCCAACCCCGGTTCACCACACGACAGCAACAGATCGGGTTCTGCCCTCGGCGACCTCAACCGGTTCGGAGACCGGTCTGGCACAGCGGTCACCACTACTCGTTTCGCGACTTCGAGGCCAAAGCCAAAGCGTTCGAGAAAAGCTACCTCAAGAAAGGTAAAAAGTGCGCTTCAACGCTTTCCCCTCTCGAAGTGGAGACTCTGTATTGGAAGGCCACCGCTGATAAGCCCTTTTCTGTTGAGTATGCAAACGACATGCCAGGCTCTGCGTTTGCAGGACCAAACGACGGAGGTGGTGGTGGAGACAGCGTCGTAACTGTTGGCGAGACTGCGTGGAACATGAGAGCGGTTTCGAGGGCAAATGGTTCTCTGTTGAGGTTCATGAAGGAGGAGATTCCTGGAGTGACTTCACCTATGGTGTATGTTGCTATGTTATTTAGCTGGTTCGCTTGGCATGTGGAGGATCATGACTTGCATAGCTTGAATTACCTTCATATGGGTGCTCCAAAGACATGGTATGGCGTGCCTAGAGACGCAGCCGTTGCATTCGAGGAAGTTGTTAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACTACAGTGATGTCGCCGGAAGTATTCATTAGCGCGGGTGTTCCCTGCTGCAGATTAGTGCAAAATGCTGGGGAATTTGTGGTGACGTTTCCGAGAGCGTATCACACAGGATTTAGTCACGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATTAATTATCCTCCTATGGTTTCACATGTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAGTCCCTGGAGGCATGAGCACTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGTAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGTTACGGAATAATGATCTGCTTCACGTACTCGGAAAAGGATCTTCTATAGTACTTCTTCCTCGTAGCTCTTCTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCTCAACAACTAAAAGTGAACACTGAGTTTTCTCTCAATGAATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTAATTTCTGATGACCTGGTGTTCAACAGGAACCATGGAATAAAAAAAGTAAAAGGTTTTTATTCTGTAAAAGAAAAGTTTGCCTCATTGTGTGAAAGGAACAGGGTTTGTTCATTCAGTGCGAATGGTAACATATGCACGTCAAGTTCAAAAACACTGCAAAGCGACACTGAAAATGAAACAAGTCAAGGAGATGGATTGTCAGATCAGAGATTATTTTCATGTGTCACATGTGGAATATTGAGCTTTTCTTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGACCGTTGGTTCTGGAGTAACTAGCAATAAATTTACTGTTGCCCATGAAGATGCAAGTATTCCCAAACCCAGCACATATACAGGATGGACAAAACAGAATGCTGGAAATGATGTATATGATGCTCTTGTTGAATCTATTGAACAACAGACACAGATTGCTGATCATAATTCCAAGGAGGATTTAAATACTGAAAGAAAAAAAGGCAATACAGCTCTTGCACTATTGGCTTCGGCATATGGAAATTCTTCCGACTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGCTGACGGTGATGAATTGAATGTGATGAAGCATCCATCAGCAAGTAGATCTCAGGAGATACCTTGTTTGCCTTCTCAATTTCAAGATTACCATGGTAGTCCCATTGTTAGACTTGATGGAGATGATAGTCCTTCGGAGAGTATTGGCAATTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGAGCCCGTTTGACTACTCTGTTAAGTCAGAAGATTGTAACATCACTTCAGGGGGAGCATTTAAAAATAACAGGGCAGTACCTTATTCCACCATGAATTGTTCTCAAGATACTCATGCTGTAACGTCATTGATGGGCAAGACTGCGATTCCCATTGACAATAAAAATGTTTCATTGGGGGCACCATCTGATGAAGACTCGTCTAGAATGCATGTCTTCTGTCTAGAGCACGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGAGGTGCCCACATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCAAAGTTTATGGCAGAAGAATTGGGGATTGATTACATGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGATGAGGAGAGGATCCAATCATCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGCGCCAATCTTAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGTCGTAGCACTCCATCAAGCTCTCCCATAGAACCCAAGGTCTATCAGAGAAGGGCTAACAAACAGAAAAAGGTAGTTGCTGGGAAATGGTGCGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTATTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGTCATTACCTGATGAGAAACTTGAGAGATCAGAAATTACCCACAAAAGCAATACTACAATTAAAAAATCTGGTAGGAAAAGGAAAATGACTGTGGAGAGTGGAGAAGCCAGGGAAGGAAGTATTGCTGAGAGAGATTGGCTATCAGATGATTCAATTGAAGATAAATCCAATCAATCTCGAAGGAAGATTCTTCGAAGTAAGCGAACCAGGCATATTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCAGCATCATAGAAAGCCTATAAGCAAGCGTGCAAAATGCATTGAAAGTTCAGTTTCAGATGATTCACTGGATGATAATACTCATATACAGCATTGGAGGAAGGCTAATGCCAAGGAAGCTAAATTTATTGACAGTGATGTGGTTTCAGATGACACAATGGACTATGATTCTGATTGGGCACAGAGGGGAGAGCTTAGCGACAAGCAAGATGTTTTTTCAGAAGACTCATTGGATGTTGGTTCTCTTCAGCTGCAAAGAAAGACTCCTAAAAGCAAGTATGATCAATACATTGCCGAAGAAGATGTGATTTCTAATGATGAAACAGAAGTTTATTTTCAGAAGCAGAAAGGGAGGATATCTAAAAGTAGGAATCACAAATTCCTTTCTGAAAAAGAGACAGTGATATCTGATGACCAACTGGAGCACCACATGCAGAAGCAGCAACAGAGGCATCCTAAAAGCAGGCAAGACAAATACCTTGCTGGAGAGAATATTATATCTGATGATCAACTGGAGGGTCATTGTCGCAAGTATCAAAGAAGGATTCCTAAAGACAGGCAAGCCAAATGTGTTACTGGGGAAGATGTAGTGTCTGATGACCAGTTGGATGATCACTTTCAGAAGCCCCAAAGGAATGTTCGAAGGAGCAGGCAAAATAAATACAATGATAGAGAAGTTGTGGATGACTCGACTGAAAATAATTCTCATCTGTTGTACAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGATGAAGACTCTGTAAATTCAGATGATCAAGTAGAGGATGATTCTCATCAGCAACACAGGAGAACTCTTCGAAGTAAGCAATCTAAACCACAACTACAGACTCTTAAACATATGAAACAAGCTAACCCTCTCCGTGTGAGAAGCAAGACATCCCGGCCTGTGAAACGAGGTGCTCTTAAGCTAATGAAATCAAAGGCTCCTCGGCAAATGAAGCAGCAGCCTTGTGTATGGAATAGTCAATCTGGTAACTCCAGAGACGAGACTTTACATATTGAAGAGGAGGAAGAAGGTGGACCTAGCACAAGGCTTAGGAAGAGAGTTCCGAAAATTCAGAAGGAATCTGAAGGAAAATCAAAAGAGAAGGAAACCAAAAAGAAAAAAGTGAAGAATGCCACAGCTGCAAAGGTTTCAGCTGGCCGGGCCAAAGTGAAGGATGAGGAAGGTGAATACCAGTGTGACATTGAGGGGTGTAACATGAGTTTTGGGTCTAAACAGGAGCTGGTGCATCATAAGAGAAATATCTGTCCTGTGAAAGGATGTGGAAAGAAATTTTTCTCACACAAATATCTGGTGCAGCACCGACGAGTTCATGAGGATGACCGTCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTCCACACTGGTGCTCGTCCATATGTATGTGCTGAGACAGGGTGTGGGCAAACCTTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAACAAAGAAGAATCGTTGA 4731 0.4335 MAGSEEVFPWLKSLPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPVPPSPKKTAISNLNRSQPRFTTRQQQIGFCPRRPQPVRRPVWHSGHHYSFRDFEAKAKAFEKSYLKKGKKCASTLSPLEVETLYWKATADKPFSVEYANDMPGSAFAGPNDGGGGGDSVVTVGETAWNMRAVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHVQLLYDLGLALCSRVPGGMSTEPRSSRLKDKRKGVGETVIKELFVQDVLRNNDLLHVLGKGSSIVLLPRSSSDISVCSKLRVGSQQLKVNTEFSLNECNSEGMNSSKGLISDDLVFNRNHGIKKVKGFYSVKEKFASLCERNRVCSFSANGNICTSSSKTLQSDTENETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWTVGSGVTSNKFTVAHEDASIPKPSTYTGWTKQNAGNDVYDALVESIEQQTQIADHNSKEDLNTERKKGNTALALLASAYGNSSDSEEDQGDSDIAADGDELNVMKHPSASRSQEIPCLPSQFQDYHGSPIVRLDGDDSPSESIGNYEYYMHKRVERIMSPFDYSVKSEDCNITSGGAFKNNRAVPYSTMNCSQDTHAVTSLMGKTAIPIDNKNVSLGAPSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFMAEELGIDYMWKNTVYRHANREDEERIQSSLDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPSSSPIEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLHGWSLPDEKLERSEITHKSNTTIKKSGRKRKMTVESGEAREGSIAERDWLSDDSIEDKSNQSRRKILRSKRTRHIERDDTASEGDYSPLQHHRKPISKRAKCIESSVSDDSLDDNTHIQHWRKANAKEAKFIDSDVVSDDTMDYDSDWAQRGELSDKQDVFSEDSLDVGSLQLQRKTPKSKYDQYIAEEDVISNDETEVYFQKQKGRISKSRNHKFLSEKETVISDDQLEHHMQKQQQRHPKSRQDKYLAGENIISDDQLEGHCRKYQRRIPKDRQAKCVTGEDVVSDDQLDDHFQKPQRNVRRSRQNKYNDREVVDDSTENNSHLLYRTPKRKQAKCMDEDSVNSDDQVEDDSHQQHRRTLRSKQSKPQLQTLKHMKQANPLRVRSKTSRPVKRGALKLMKSKAPRQMKQQPCVWNSQSGNSRDETLHIEEEEEGGPSTRLRKRVPKIQKESEGKSKEKETKKKKVKNATAAKVSAGRAKVKDEEGEYQCDIEGCNMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAETGCGQTFRFVSDFSRHKRKTGHSTKKNR. 1577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1262 1292 - -
Seca12g01673 1576 SUPERFAMILY Clavaminate synthase-like 189 350 - -
Seca12g01673 1576 Pfam jmjN domain 18 51 IPR003349 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 984 1017 - -
Seca12g01673 1576 ProSitePatterns Zinc finger C2H2 type domain signature. 1546 1570 IPR013087 -
Seca12g01673 1576 SMART cupin_9 173 342 IPR003347 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1032 1070 - -
Seca12g01673 1576 ProSiteProfiles Zinc finger C2H2 type domain profile. 1484 1513 IPR013087 -
Seca12g01673 1576 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1397 1440 - -
Seca12g01673 1576 SMART c2h2final6 1461 1483 IPR013087 -
Seca12g01673 1576 SMART c2h2final6 1484 1508 IPR013087 -
Seca12g01673 1576 SMART c2h2final6 1514 1538 IPR013087 -
Seca12g01673 1576 SMART c2h2final6 1544 1570 IPR013087 -
Seca12g01673 1576 Gene3D Cupin 10 346 - -
Seca12g01673 1576 SUPERFAMILY beta-beta-alpha zinc fingers 1500 1542 IPR036236 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1044 1064 - -
Seca12g01673 1576 SMART JmjN_1 16 57 IPR003349 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1000 1017 - -
Seca12g01673 1576 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1510 - -
Seca12g01673 1576 FunFam Probable lysine-specific demethylase ELF6 1511 1540 - -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1305 1332 - -
Seca12g01673 1576 ProSiteProfiles Zinc finger C2H2 type domain profile. 1544 1575 IPR013087 -
Seca12g01673 1576 FunFam Probable lysine-specific demethylase ELF6 10 346 - -
Seca12g01673 1576 FunFam Probable lysine-specific demethylase ELF6 1541 1570 - -
Seca12g01673 1576 ProSiteProfiles Zinc finger C2H2 type domain profile. 1514 1543 IPR013087 -
Seca12g01673 1576 ProSitePatterns Zinc finger C2H2 type domain signature. 1486 1508 IPR013087 -
Seca12g01673 1576 ProSitePatterns Zinc finger C2H2 type domain signature. 1516 1538 IPR013087 -
Seca12g01673 1576 Gene3D Classic Zinc Finger 1482 1568 - -
Seca12g01673 1576 Pfam JmjC domain, hydroxylase 206 324 IPR003347 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1382 1396 - -
Seca12g01673 1576 ProSiteProfiles JmjC domain profile. 176 342 IPR003347 -
Seca12g01673 1576 MobiDBLite consensus disorder prediction 1262 1444 - -
Seca12g01673 1576 SUPERFAMILY beta-beta-alpha zinc fingers 1532 1566 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01673 Seca-Chr12 18267400 18276904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01673 796 897 C2H2 Transcription Factor Family AT5G04240 32.353 1.93e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g01673 JmjC 2.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01673 - - gmx:100775813 2106.64