Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01671 ATGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTTATTAGTCCATCACAGATTAGGGACGGATTTTTTATGCTTCTTGAATCTGCTGATGATCTTGCGGTTGATATACTGGATGCAGTGGATATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCTTTTCTTGCCAGGGCACGGAAGGCTCTTCCAGAATCTTCCAATGGAGTTCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACATCATGCTGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGATGCATTTGAAGCCTGTAGGTGCATACGTGAATTGGGGGTTTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTCTGGTACTTGCCATGGAGATTCGTTCGGCAGAACCTCTAATGTTGAAGCTATTGAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCTAGTCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGGCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTGAGTCATTTGTCCCAAAGGCAATAGCTGAAGGATGGCTTGATGCTTCTTCATTGACCAAACCTGCTGGTGAAGATGGGGAAATCCAAGTTGAAGATGAGAGGGTGAAGAAGTACAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATCCGGAGTCTTGAAGATCTTGGAGCACCTGAGTATAACTCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGACAGAAAGAACAGAGAAAAAGAAATGGCATCTGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCTACAGAGGACATAGTTAATGGTTTTGTCATGCTTCTGGAAAGCGCAGAAGATACAGCACTGGATATATTGGATGCATCAAATGAGCTTGCTCTTTTCTTAGCACGGGCTGTGATTGATGATGTATTGGTCCCATTGAATTTGGAAGAAATTGGCAGCAGGTTAACACCAAATTGTAGCGGTAGTGAAACTGTGCGTATGGCTCGTTCACTCATTGCTGCTCGTCATGCTGGGGAAAGGCTATTGAGATGCTGGGGTGGAGGGACTGGATGGGCTGTGGAAGATGCTAAGGACAAGATCATGAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTGAGTGAAGCATGCCAGTGTATTCGTGACCTGGATTTGCCTTTCTTTAACCATGAGGTGGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTAGATCTGCTGCAGGAGTGCTTTAGTGAAGGCCTGATCACAATCAATCAGATGACTAAAGGGTTCACCCGAGTTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAAAAATTTGGCTTCTATGTGGAGCATGCACAGAAGAAAGGCTGGCTTCTACCTTCATTTGATTCATCTGCCTCAGACGTCTAA 1620 0.4383 MAMDRHDKEKEMASVLLSALYADVISPSQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSNGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFESFVPKAIAEGWLDASSLTKPAGEDGEIQVEDERVKKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLVPLNLEEIGSRLTPNCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLDLPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRVKDGLDDLALDIPNAKEKFGFYVEHAQKKGWLLPSFDSSASDV. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01671 539 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Seca12g01671 539 SUPERFAMILY ARM repeat 416 534 IPR016024 -
Seca12g01671 539 FunFam Programmed cell death protein 4 405 538 - -
Seca12g01671 539 Pfam MA3 domain 122 233 IPR003891 -
Seca12g01671 539 Pfam MA3 domain 258 367 IPR003891 -
Seca12g01671 539 Pfam MA3 domain 1 69 IPR003891 -
Seca12g01671 539 Pfam MA3 domain 421 528 IPR003891 -
Seca12g01671 539 PANTHER PROGRAMMED CELL DEATH 4 1 533 IPR039778 GO:0045892
Seca12g01671 539 FunFam programmed cell death protein 4 246 400 - -
Seca12g01671 539 ProSiteProfiles MI domain profile. 256 377 IPR003891 -
Seca12g01671 539 SUPERFAMILY ARM repeat 1 115 IPR016024 -
Seca12g01671 539 ProSiteProfiles MI domain profile. 419 538 IPR003891 -
Seca12g01671 539 FunFam Programmed cell death protein 4 107 241 - -
Seca12g01671 539 ProSiteProfiles MI domain profile. 1 78 IPR003891 -
Seca12g01671 539 SUPERFAMILY ARM repeat 118 239 IPR016024 -
Seca12g01671 539 Gene3D - 407 536 - -
Seca12g01671 539 Gene3D - 108 239 - -
Seca12g01671 539 SMART ma3_7 122 233 IPR003891 -
Seca12g01671 539 SMART ma3_7 420 529 IPR003891 -
Seca12g01671 539 SMART ma3_7 1 69 IPR003891 -
Seca12g01671 539 SMART ma3_7 257 368 IPR003891 -
Seca12g01671 539 Gene3D - 1 98 - -
Seca12g01671 539 Gene3D - 244 400 - -
Seca12g01671 539 SUPERFAMILY ARM repeat 254 412 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01671 Seca-Chr12 18230010 18234878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01671 423 516 Eukaryotic Initiation Factors Gene Family AT4G30680 32.990 1.70e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01671 - - gmx:100809081 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01671 12 18230010 18234878 Seca12g01671 12 18230010 18234878 ECH
Seca12g01671 12 18230010 18234878 Seca4g02923 4 50298761 50304047 PCT