Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01669 ATGGATGGCCGAAGGCATTCTGTTGATGTTCCAATTTCTAAAACACTTGTAGCATTGAGAAGAGTCAGATCATTGAGGGATCCATCAACTAATGGCATTAGCAAGCTCTCTCCTTTGATGGATGATGGACATTGGGAAAATGGTTCTGGTAATGGGATTTCTCTGAGGTTCCTGAATGCTTCTTATGCTTGTGATTCTGATCATGATGGTTTTTTAAGATCAAAGAATTTAGATATTAAGGGACTGAAAGAGGAGGATAATACTAATTCTGAATTGGTTTGTGGTCTGTTGAACTCTAAGATGAACTATTATGGGATCTCATGTCATGAAGGGCAGAAACATGATGATGAGCTAGTTTACTCTGACTCTGATCCTAAGCAGCAAGGATTTTCTGGAAATAAATCACCAAATGAAAGCTGTTGTAGCAACCTTGGAGGTAGAGGATTGGATTTGGCTTCTATCATGCCTCCTAGTAATCATTTGAAGGATGGGGAATCATACTATTTATCAACTGCATTATCATCACAATTGGGGAGGATAGATCACTCAAAGTCAACCAGAAAATCACTCCGCAAGAATCAAGTGAAACCATCTGAAGTGATGGGTGATAATGCAAGCCATGTAGGGAGTCCATGTCTTTCTGTTCGTGATGCTCTCTCAGCTCATAGTGCCTCAGCACATGCAACTCAAGATGTTGATGTTTTTGTTAATCACCATGGATGTGGAATAAGTTGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAACAGAAGACCTTCCCTTGATATTGCAGCATGTTAATGAGACAGATCTTCATGGACATAAAAGCATTAGATACATTGGTGGTGAAATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCCATGAAATTCAAGCCAAAATCTTTCAGTGATTTGGTTGGACAAAATGTGGTTGGAAAGTCACTTTTGGGGGCTATCTATAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCCCGTGGCACAGGGAAGACATCTGCATCCAGGATATTTGCTGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGTAGAGAATGTGTTGTGTTCTTTTCTGGGAGAAGTAAAGATGTGAAGGAAGTGGATTCATTGAGAATAAATCGCGTGGACAAGGTTAAATCCCTTGTTAAGAATGCATGCATCCCTCCAGTTTCCGCACGGTTTAAGGTGTTCATTATTGATGAGTGCCAATTATTGCATGGGGAAACATGGGCGAGTCTTTTGAACAGCCTAGAGAGTGTTTCTCAACATGCAGTTTTTGTGATGATCACTCCTGATTTGCATAAGCTTCCTCGAGGTGCAGTTTCCCGAGCTCAAAGGTACCACTTTGCAAAAATTAAAGATGGTGACATTGCAAGCAGATTGGAAAAAATTTGTGTTGAAGAAGGTCTTGAATTTGAACAAGATGCTTTGGATTTTATTGCTGCTAAATCCCATGGTTCCCTTAGGGATGCGGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAGCTTACTGGGGTAATTTCTGATGATGAATTGCTTGAGTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTGATAAGGGCCCGGGAGCTGATGAGATCAAGGATAGATCCTTTACAACTTATATCACAGCTAGCAAATCTTATTATGGATATCCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAAATCAGAAGAAGATTTTCTAGTAGACATACCTCGGAAGCAGACCTGCAGAAACTTAGTCACGCGTTAAGAATACTTTCTGAAACAGAGAAGCAGTTGAGAATTTCTAAGAATCAAACTACGTGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTGTAGAATGTTCATCTGGGGATGCAAATGATACCAAGTTATGTGTGAGAGCTGCTTCTGATAGAGATGGTGATTTATGCAGCACATCTTCTACAGGGGAGAGCTTGAAGCATGTTGCTACAGGTCAGTGTGATGAGAAGTCATATGGATTAGGATTGCAGGAGGATCACAATGGGACATTGGATTCCATATGGTATAAAGCTACAGAAATATGTCAATCTAGTAGTAGGCTAAGAACTTTTCTTAAGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTGATCAAGGTCTTGCAGTTGTTGAGTTGGAGTTCCACCACCGTGACTATGTAGCTAGGGCTGAGAAGTCATGGAAACTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAACATTGAGCTCAGAATCAATTATGTACCTTGTACTTCGGATTCTAAGCATGCTAAATTGAAGAGGTCATCTTTCAATTTATTTAGTTGTTCCCGCCGAATTCTAAGGAAGTCATTATCATCTGATGGACAAGGAAGTGAATCAGACTATGCTGATTACACCTCTCAAAAGCCAATGACAAAGGATCAAACTCTAACTTGTTCCTCGGATTGTGGGTCGCGGGTGCCACCACTTGAATCCTACCCTGGAATGCAGGTTGTAACAACTTTGAGAAGTTGTGAAGGGAATTTGCTAAGCTCAGGGAAAATATTCTTGAATAGGTCATGTCAAGAGACTCCAAAGATTTCATTTTCTAGAGTTGAATCTCTCAAGGAAGAGGGATGCAATTATGAACATCTTGCTTCATCAAAGGTTGATTTAGATAATCAGTCTAACTGTTTTCCTCGATCCCTCTGGCTTCATAGAAAATTCTCTTCTTCACATGCATCACAACAGAAGGATTTTGTTTTATCAATCTCCAAGTACCAATGTTCTGAGACTTATAGCTATGATAAGGAGCCCTGTGTTTTTCCCCACAGCTCTAATAACTATACCAAAGCTGTTGAGGAAAAGTAG 2943 0.4027 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLMDDGHWENGSGNGISLRFLNASYACDSDHDGFLRSKNLDIKGLKEEDNTNSELVCGLLNSKMNYYGISCHEGQKHDDELVYSDSDPKQQGFSGNKSPNESCCSNLGGRGLDLASIMPPSNHLKDGESYYLSTALSSQLGRIDHSKSTRKSLRKNQVKPSEVMGDNASHVGSPCLSVRDALSAHSASAHATQDVDVFVNHHGCGISCCWSKSPRFRESNHYSETEDLPLILQHVNETDLHGHKSIRYIGGEISPTLETPRSLSMKFKPKSFSDLVGQNVVGKSLLGAIYRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSLEEQRPCGLCRECVVFFSGRSKDVKEVDSLRINRVDKVKSLVKNACIPPVSARFKVFIIDECQLLHGETWASLLNSLESVSQHAVFVMITPDLHKLPRGAVSRAQRYHFAKIKDGDIASRLEKICVEEGLEFEQDALDFIAAKSHGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLELLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKCELGGSEIRRRFSSRHTSEADLQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVECSSGDANDTKLCVRAASDRDGDLCSTSSTGESLKHVATGQCDEKSYGLGLQEDHNGTLDSIWYKATEICQSSSRLRTFLKKQGKLSSVCIDQGLAVVELEFHHRDYVARAEKSWKLIASSLQFILGCNIELRINYVPCTSDSKHAKLKRSSFNLFSCSRRILRKSLSSDGQGSESDYADYTSQKPMTKDQTLTCSSDCGSRVPPLESYPGMQVVTTLRSCEGNLLSSGKIFLNRSCQETPKISFSRVESLKEEGCNYEHLASSKVDLDNQSNCFPRSLWLHRKFSSSHASQQKDFVLSISKYQCSETYSYDKEPCVFPHSSNNYTKAVEEK. 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01669 980 NCBIfam DNA polymerase III subunit gamma/tau 299 645 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Seca12g01669 980 MobiDBLite consensus disorder prediction 124 139 - -
Seca12g01669 980 Gene3D - 293 470 IPR027417 -
Seca12g01669 980 Gene3D - 473 534 - -
Seca12g01669 980 FunFam DNA polymerase III subunit gamma/tau 473 535 - -
Seca12g01669 980 MobiDBLite consensus disorder prediction 816 845 - -
Seca12g01669 980 CDD HLD_clamp_pol_III_gamma_tau 472 535 IPR045085 -
Seca12g01669 980 MobiDBLite consensus disorder prediction 179 207 - -
Seca12g01669 980 MobiDBLite consensus disorder prediction 117 139 - -
Seca12g01669 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 522 IPR027417 -
Seca12g01669 980 FunFam Protein STICHEL-like 1 isoform C 536 649 - -
Seca12g01669 980 SMART AAA_5 331 474 IPR003593 GO:0016887
Seca12g01669 980 CDD AAA 313 463 - -
Seca12g01669 980 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 300 710 - -
Seca12g01669 980 SUPERFAMILY post-AAA+ oligomerization domain-like 542 643 IPR008921 GO:0003677|GO:0006260
Seca12g01669 980 Pfam DNA polymerase III, delta subunit 315 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01669 Seca-Chr12 18196638 18201832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01669 290 628 Core DNA Replication Machinery Family AT1G21690 24.490 1.30e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01669 - - pcin:129308301 1257.66