Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01666 ATGACATCCACTTCACTCTCTCTCCTCTTCTTCCTCTTCTCTCTCCTCACCCCTTCCCTCATTTCCTCTTCCCCTGTTCAGGACCCTGAATTGATAGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTATTGCTAGGAGGAATTTGGGGTACCTCTCCTGTGGGAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGATCCTAACTGGGAGAAGAACAGGCAGAGGCTAGCAGATTGTGCAATTGGTTTTGGCAAGAATGCCATTGGTGGGAGAGATGGTAAAATTTATGTGGTCACTGATTCTGGAGATGATAACCCTGTGAGCCCCAAACCAGGAACCCTTCGTTATGCAGTGATTCAAGATGAGCCATTATGGATCATATTTGCAAGGGACATGGTGATTCAATTGAAGGAAGAACTCATCATGAACTCATTCAAGACCATTGATGGAAGAGGCGCGAGCGTGCACATTGCTGGTGGTCCATGCATAACGATTCAGTATGTGACTAATATTATAATCCATGGTATAAACATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACACCCCACGGCACTACGGGTGGAGAACTGTATCGGATGGTGATGGTGTGTCCATCTTTGGTGGAAGTCATGTATGGGTGGACCATTGTTCCTTATCTAACTGCAATGATGGGTTGATTGATGCCATCCATGGGTCCACTGCTATTACCATCTCAAACAATTACATGACACACCATGATAAGGTTATGTTGTTGGGTCATAGTGATACATACACTCAAGACAAGAACATGCAAGTCACAATAGCTTTTAATCACTTTGGAGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCAATTGGGGGAAGTGCTAATCCAACCATCAATAGTCAAGGAAACAGATTTGTTGCACCTGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAATGAATGGAAGGGGTGGAATTGGAGGTCAGAAGGAGATTTAATGGTAAACGGTGCGTTTTTCACAGCTTCAGGGGCAGGAGCATCTTCAAGTTATGCAAGAGCTTCAAGCTTAAGTGCAAGGCCATCTTCTCTAGTGGGTACAATAACAGGTGGTGCAGGTGCACTTGTCTGTAGGAAAGGTTCTCGTTGCTGA 1221 0.4472 MTSTSLSLLFFLFSLLTPSLISSSPVQDPELIAQEVNRKINASIARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDNPVSPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDTPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPENEWKGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGTITGGAGALVCRKGSRC. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01666 406 Gene3D - 57 399 IPR012334 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Seca12g01666 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Seca12g01666 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Seca12g01666 406 SUPERFAMILY Pectin lyase-like 43 401 IPR011050 -
Seca12g01666 406 SMART amb_all 132 329 IPR002022 -
Seca12g01666 406 FunFam Pectate lyase 57 399 - -
Seca12g01666 406 Pfam Pectate lyase 143 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01666 Seca-Chr12 18145809 18148293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01666 1 406 Polysaccharide Lyase AT5G63180 81.663 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01666 K01728 - gmx:100101868 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01666 12 18145809 18148293 Seca4g02926 4 50347346 50349644 ECH
Seca6g01802 6 74304052 74306729 Seca12g01666 12 18145809 18148293 ECH
Seca4g02926 4 50347346 50349644 Seca12g01666 12 18145809 18148293 ECH
Seca12g01666 12 18145809 18148293 Seca12g01666 12 18145809 18148293 ECH
Seca12g01666 12 18145809 18148293 Seca4g02926 4 50347346 50349644 PCT