Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01663 ATGCAAATGGGTGCCCAAACTATACCCATCGACTTCCACAACACCCGGGTCTTACCCGATTACGATGTATTCATACACACTTCCGATGGAACACGCATTCCCGCACACGCTGCCATTCTGGCTTCGGTGTCGCCGGTTTTGGAAAACTTGATAGATCGACCGCGGAAGCATCGGAGCTCCGAAAGAATAATCCAAATCCACGGCGTTCCATGCGACGCCGTTTCAGCCTTCGTTGGCTTCCTCTACACCTCGAGGTGCACGGAGGATGAGATGGACAAATACGGGATGCACCTGCTTGCACTCTCGCATGTGTACCTGGTCCCTCAGCTGAAACAGAGATGCATCAAGGGCTTATCACAGCGCTTGACCACAGAGAACGTGGTGGACGTGCTTCAACTCGCGAGGCTCTGCGACGCACCGGATCTCCATCTCCGCTGCATGAACCTCCTCACGAATCACTTCAAGGCCGTTGAAAAAACCGAAGGATGGAAGTTCCTTACCAAACACGATCCCTGGCTCGAACTCGATATCCTTCGCTTCATCGACGAACGCGAAACGAGGAAAGTGAAATCGAGGAGGCATAGGGAAGAACAGGGGCTGTATTCGCAATTGAGTGAGGCGATGGAGTGTTTGGAGCACATTTGCACGGAGGGTTGCACAGAGGTTGGACCTTACCATGTGGAGGTTAACAGAGAGAGGAAACCGTGTAGTAGATTCTCCACGTGTCAAGGTCTTCAGCAACTGATTCGTCATTTCGCCACTTGTAAGAGGAGGATGAATGGAGGATGCTTGAGATGCAAGAGAATGTGGCAGTTATTCAGACTCCATTCCTATATTTGTCAACAAACTGATTCTTCTTGCAATGTTCCTCTTTGCAGGCAATTTCAATTGAGAATGCAGCAAGAGAAAAGGAAAGATGATTCAAGGTGGAAACTACTAGCGAAGAAAGTGGCCTCAGCCAGAGTCATGTCTTCCTTGTCTCTGCCAAAGAGGAAACGGGATGAAGAAACAAGAGTGGCGATAAACAATCCTGGGATTAGAAGTTTTAATTTACAATGA 1059 0.491 MQMGAQTIPIDFHNTRVLPDYDVFIHTSDGTRIPAHAAILASVSPVLENLIDRPRKHRSSERIIQIHGVPCDAVSAFVGFLYTSRCTEDEMDKYGMHLLALSHVYLVPQLKQRCIKGLSQRLTTENVVDVLQLARLCDAPDLHLRCMNLLTNHFKAVEKTEGWKFLTKHDPWLELDILRFIDERETRKVKSRRHREEQGLYSQLSEAMECLEHICTEGCTEVGPYHVEVNRERKPCSRFSTCQGLQQLIRHFATCKRRMNGGCLRCKRMWQLFRLHSYICQQTDSSCNVPLCRQFQLRMQQEKRKDDSRWKLLAKKVASARVMSSLSLPKRKRDEETRVAINNPGIRSFNLQ. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01663 352 FunFam BTB/POZ and TAZ domain-containing protein 2 194 321 - -
Seca12g01663 352 SUPERFAMILY TAZ domain 196 296 IPR035898 -
Seca12g01663 352 Pfam TAZ zinc finger 205 292 IPR000197 -
Seca12g01663 352 CDD BACK 123 170 - -
Seca12g01663 352 FunFam BTB/POZ and TAZ domain-containing protein 2 123 193 - -
Seca12g01663 352 Gene3D - 123 195 - -
Seca12g01663 352 Gene3D Potassium Channel Kv1.1; Chain A 12 122 IPR011333 -
Seca12g01663 352 SMART TAZ_2 198 293 IPR000197 -
Seca12g01663 352 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 20 335 IPR044513 -
Seca12g01663 352 SUPERFAMILY POZ domain 21 120 IPR011333 -
Seca12g01663 352 Pfam BTB/POZ domain 22 120 IPR000210 GO:0005515
Seca12g01663 352 ProSiteProfiles BTB domain profile. 21 90 IPR000210 GO:0005515
Seca12g01663 352 SMART BTB_4 21 122 IPR000210 GO:0005515
Seca12g01663 352 Gene3D TAZ domain 196 321 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01663 Seca-Chr12 18088812 18092723 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Seca12g01663 BTB 8.8e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01663 - - cam:101496955 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01663 12 18088812 18092723 Seca12g01663 12 18088812 18092723 ECH
Seca12g01663 12 18088812 18092723 Seca4g02931 4 50412560 50414812 PCT