Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01658 ATGGCTTTATCCCCTCATAAATCCCACCTCTTAATCTTTCCATTCTTCTTCTTGCTCATTCATGCCAAACTAGACCTCCACCCTTCAGACCTCAAAGCTCTCACAACTGTCCTAAAACACATTGGACTGGGAGTCAACGGTCAACTCCACCCATGTAACACAGAGGGTGTGTTCTGTGAGAGGAGACTCTCCAACAACGAGAGCTATGTTCTAAGGGTCACCAGGCTCATCTTCAACTCCAAGAACCTCAATGGGGTTCTCTCCCCTGCAATTGGGAACCTCTCCGAGCTCAAAGAACTCTCTTTTTCCAACAACCAGCTCGTTGACCAAATACCCTTCCATATCGTTGACTGCAGGAAGCTCGAAATCCTAGACCTCAGAAACAACCAATTATCAGGGAATGTTCCACCTGAGCTTTCTTCTCTCATTCGCCTTAGAATCCTTGATATCTCTTCCAACAAGCTTTCTGGAAACTTAAACTTCTTGAAGTATTTTCCCAACTTGGAAAGTCTCTCTGTGGCTGAAAATCTCTTCACAGGGAAAATTCCATCATCTATTCGTTCCTTTCGCAATCTTAGACACTTCAACTATTCCGGGAACCGTTTCCTTGAAGGCTCTGTGCCATTGGTGAGGCTAGAAGGGTCAGGGTCAGCATCAGAATCAGATGTAATCCCCAAAAGGTTCATCCTTTCTGAGACTCCAGCTGAAAGAATGAAAAGATACACAGCTCCTGCACCTGCTCTGAAACCCAGTAAGAGTAATGGCCCTGCTCAAGCTCCTGCTCCAACAAGAGCAACCCACAAGCACAAGCATAAATCGAGCAAGAGGAAACTTGCTGGTTGGATTGTTGGTTTTGTAGCTGGGGCACTAGGTGGGATCTTATGTGGGCTAATATTTTCTTTGCTGTTCAAGCTGGCCATGGCTGTTATCAAAGGGGGTAGGAAGACCTCAGGGCCTGCAATTTTCAGTCCTTTGATTAAGAGAGCAGAGGACTTGGCTTTCTTAGAGAAAGAAGATGGACTAGCTTCATTGGAGATCATTGGAAGTGGTGGCTGTGGAGAAGTTTACAAGGCTGAATTACCAGGAAGCAATGGCAAGATGATTGCTATAAAGAAAATTGCTCAACAACTTCAAAGGGATGCAGCAGAATTAGCTGAAGAAGCCAGCAAGCTTTTGAGCAAAAAGATGCGTCAAATTCGATCAGAGATCAACACAGTTGGTCAAATTCGACACCGCAATCTCCTACCCTTGCTGGCTCATATGTCCAAGCCTGATTGCCACTATCTTGTCTATGAATATATGAAGAATGGAAGTCTGCAAGGTGTGTTGAATCAAGTTCAAGAGGGTAGAAGGGAACTAGATTGGTTGTCACGTCACAAAATTGCACTTGGAGTAGCATCTGGCCTTGAATACCTTCACATGCATCATAGCCCACGTATTATTCATAGAGATCTCAAGCCAGCAAACATTCTTCTTGATGATGATATGGAAGCTCGGATTGCAGATTTTGGGCTTGCTAAAGCAATGCCAGATACTATGACACACGTGTCAACTTCAAATTTGGCTGGCACTGTGGGATATATAGCACCAGAGTATCACCAGATACTCAAGTTCACTGATAAGTGTGACATATACAGCTATGGTGTTATGCTCGGTGTCATGATCATAGGAAAGCTTCCTTCTGATGACTTTTTCCTGCAAACTGACGAAATGAGTTTGGTCAAGTGGATGAGAAATGTGATGGCGTCAGAAAATCCCAAGCGAGCAATTGATACAAAGCTCATAGGCAATGGATACGAGGAACAAATGCTTCTGGTTTTAAGGATTGCCTGCTTCTGTACTTTAGATGATCCAAAGGAAAGGCCTAATAGTAAGGATGTTAGGTGCATGTTGGCCCAAATCAACCACTGA 1911 0.4417 MALSPHKSHLLIFPFFFLLIHAKLDLHPSDLKALTTVLKHIGLGVNGQLHPCNTEGVFCERRLSNNESYVLRVTRLIFNSKNLNGVLSPAIGNLSELKELSFSNNQLVDQIPFHIVDCRKLEILDLRNNQLSGNVPPELSSLIRLRILDISSNKLSGNLNFLKYFPNLESLSVAENLFTGKIPSSIRSFRNLRHFNYSGNRFLEGSVPLVRLEGSGSASESDVIPKRFILSETPAERMKRYTAPAPALKPSKSNGPAQAPAPTRATHKHKHKSSKRKLAGWIVGFVAGALGGILCGLIFSLLFKLAMAVIKGGRKTSGPAIFSPLIKRAEDLAFLEKEDGLASLEIIGSGGCGEVYKAELPGSNGKMIAIKKIAQQLQRDAAELAEEASKLLSKKMRQIRSEINTVGQIRHRNLLPLLAHMSKPDCHYLVYEYMKNGSLQGVLNQVQEGRRELDWLSRHKIALGVASGLEYLHMHHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDTMTHVSTSNLAGTVGYIAPEYHQILKFTDKCDIYSYGVMLGVMIIGKLPSDDFFLQTDEMSLVKWMRNVMASENPKRAIDTKLIGNGYEEQMLLVLRIACFCTLDDPKERPNSKDVRCMLAQINH. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01658 636 SUPERFAMILY Protein kinase-like (PK-like) 329 632 IPR011009 -
Seca12g01658 636 Gene3D Phosphorylase Kinase; domain 1 332 433 - -
Seca12g01658 636 Gene3D Transferase(Phosphotransferase) domain 1 434 635 - -
Seca12g01658 636 Gene3D Ribonuclease Inhibitor 29 218 IPR032675 -
Seca12g01658 636 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 68 159 - -
Seca12g01658 636 SUPERFAMILY L domain-like 49 204 - -
Seca12g01658 636 SMART serkin_6 341 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01658 636 FunFam Leucine-rich repeat receptor-like protein kinase 434 636 - -
Seca12g01658 636 Coils Coil 367 402 - -
Seca12g01658 636 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515
Seca12g01658 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 55 634 - -
Seca12g01658 636 ProSiteProfiles Protein kinase domain profile. 341 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01658 636 Pfam Protein kinase domain 344 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01658 636 MobiDBLite consensus disorder prediction 244 273 - -
Seca12g01658 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01658 Seca-Chr12 18038124 18040034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01658 24 636 Receptor kinase-like Gene Family AT2G31880 63.259 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca12g01658 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01658 - - qsu:111990511 881.322