Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01656 ATGTCTATCACAACCATGCCTTCCTTCAAGTCCCTCACAGTGGCGGAATCGTGCCTTCTCTCTCAACCCTCACTCTTCCACACCAAAACTAAACACCCATTTACCTCAATTTCCTTTAAGCCCCTCAAGCTGCACCACCAATTACCATCACCCTCTCTCCCCCTCTCCAAGAGGACTTCCTCTCTCCTCACATTTGTAGCACAGACTTCGGATTGGGCTCAACAAGAAGGAGAAAAGGAAGAAGATGGAACCCTATGGGAGAACCAAGGGGAACCCACATGGGGAAATGAAGATGCTGATGAAACCGAAGGAAACGAGGATGGTGAAGGTGAGATTTTTGGTGATGGGGGTTATGCTGAGCCATCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCATGGAATGTTGACAGTGAGAGATTGGCCATGCTTTTTGAGCAGGCTGGGACTGTGGAGGTTGCTGAGGTTATTTATAATAGGGCCACAGACCGAAGTCGTGGGTTTGGATTTGTAACCATGAGCACAGTTGAAGAAGTTGAGAAGGCTGTGGAGAAGTTCAGTGGCTATGAATTGGATGGAAGATCGTTGACTGTTAATAAGGCTGCTCCAAGAGGAACACAGCCTGAACGCCCACCACGTGCCTCTGATGGTGGTTTAAAAATCTATGTTGGTAACTTGCCATGGGATGTTGACAATGCTCGCCTGGAGCAACTTTTCAGTGAACATGGTAATGTTGACAATGTCCGGGTAGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGCCTTTGTCACAATGTCCAGTGAGGCTGATACAAATAATGCCATTGCTGCTCTTGATGGTCAGGTATAA 855 0.4713 MSITTMPSFKSLTVAESCLLSQPSLFHTKTKHPFTSISFKPLKLHHQLPSPSLPLSKRTSSLLTFVAQTSDWAQQEGEKEEDGTLWENQGEPTWGNEDADETEGNEDGEGEIFGDGGYAEPSEDLKIFVGNLPWNVDSERLAMLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTVEEVEKAVEKFSGYELDGRSLTVNKAAPRGTQPERPPRASDGGLKIYVGNLPWDVDNARLEQLFSEHGNVDNVRVVYDRETGRSRGFAFVTMSSEADTNNAIAALDGQV. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01656 284 CDD RRM1_PSRP2_like 126 205 - -
Seca12g01656 284 MobiDBLite consensus disorder prediction 94 110 - -
Seca12g01656 284 PANTHER OS02G0815200 PROTEIN 24 283 - -
Seca12g01656 284 CDD RRM2_NsCP33_like 220 283 - -
Seca12g01656 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Seca12g01656 284 MobiDBLite consensus disorder prediction 197 218 - -
Seca12g01656 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 283 IPR000504 GO:0003723
Seca12g01656 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 196 IPR000504 GO:0003723
Seca12g01656 284 MobiDBLite consensus disorder prediction 71 116 - -
Seca12g01656 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 284 IPR000504 GO:0003723
Seca12g01656 284 SMART rrm1_1 126 199 IPR000504 GO:0003723
Seca12g01656 284 SMART rrm1_1 220 284 IPR000504 GO:0003723
Seca12g01656 284 Gene3D - 66 208 IPR012677 -
Seca12g01656 284 Gene3D - 209 284 IPR012677 -
Seca12g01656 284 SUPERFAMILY RNA-binding domain, RBD 122 217 IPR035979 GO:0003676
Seca12g01656 284 SUPERFAMILY RNA-binding domain, RBD 210 283 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01656 Seca-Chr12 18018522 18021370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01656 116 284 Eukaryotic Initiation Factors Gene Family AT3G16380 24.260 1.96e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01656 - - gmx:100811487 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01656 12 18018522 18021370 Seca4g02944 4 50571305 50574561 ECH
Seca12g01656 12 18018522 18021370 Seca12g01656 12 18018522 18021370 ECH
Seca12g01656 12 18018522 18021370 Seca4g02944 4 50571305 50574561 PCT