Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01649 ATGGAGATGGAACGCGTCTTCGAATTTCCTCACACCCACATGGATCGGCGCCCACGGAAGAGAGCGAGGTTGGGCTGGGATGTTCCTGAGGCCCCCAAGATCTGGTGGAATTTGTGTAGATTAGGTATGTATGTATGGTTTCTCTATATCTGTGTAGAGCTGGCTTTGATGACTTCAATATCCCTTGCTCAGGTAGGGTTGTTTTGTGGACAAGAGGTTGAAACTATTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCTCGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTCGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACGTTTGGACAGGTCTTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGTAAACATGATAAGGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATGTATTTCATGCATGATTTACGCATGATTCATACTGATCTGAAGCCTGAAAACATACTGCTAGTTTCTCCAGAATATGTCAAAGTTCCTGATTACAAGAGTTCATCCAGGTCACCGAATTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATTAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGCCTTGGCTGGAGTTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAATTATGCACGGGTGAAGCTTTGTTTCAAACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCGCAGCATATGTTGAAGAGAGCTGACCGCCATGCTGAAAAGTATGTTAGAAGGGGTAGATTAGACTGGCCAGAGGGTGCAGCCTCGAGAGAGAGTATTAAAGCTGTAATGAAACTTCCTAGGCTACAGAACCTTGTAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTCACAGCTAAGGAAGCTCTGAGACATTCTTTCTTTTTGAGAGATCACCTTAGGAGATGA 1263 0.4355 MEMERVFEFPHTHMDRRPRKRARLGWDVPEAPKIWWNLCRLGMYVWFLYICVELALMTSISLAQVGLFCGQEVETISSYAPSRGPSEHTTSSLFVKGVARNGSPPRRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHMYFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPNSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRADRHAEKYVRRGRLDWPEGAASRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALRHSFFLRDHLRR. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01649 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Seca12g01649 420 Gene3D Phosphorylase Kinase; domain 1 100 202 - -
Seca12g01649 420 Gene3D Transferase(Phosphotransferase) domain 1 203 417 - -
Seca12g01649 420 SMART serkin_6 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01649 420 SUPERFAMILY Protein kinase-like (PK-like) 114 416 IPR011009 -
Seca12g01649 420 FunFam Serine/threonine-protein kinase AFC2 190 413 - -
Seca12g01649 420 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 202 415 - -
Seca12g01649 420 ProSiteProfiles Protein kinase domain profile. 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01649 420 Pfam Protein kinase domain 201 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01649 420 CDD PKc_CLK 114 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01649 Seca-Chr12 17819500 17823426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01649 126 413 Core Cell Cycle Gene Families AT2G38620 28.428 9.06e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca12g01649 Pkinase 4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01649 K08287 - gmx:100804452 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01649 12 17819500 17823426 Seca12g01649 12 17819500 17823426 ECH