Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01623 ATGATACTATTAAATTCCTCTATAGCTACGGCGGCAAGATCCTTCCTCGCCGCACTGACAGCGAACTCCGATACTCCGGCGGCCACACCAGGGTCCTCGCCGTCCCTCGTTCAATTTCTTTCTCAGGAGTTAATGGTGAAGCTTGGGGAATTATGTGGTTCGTCCGTCACCCTGAAGTGTCCATTGCCAAACGGAGACTTGGAAACCTTGATTTCTATCACCAGCGATGAAGATCTGACCAATATAATTGAGTTATACGATCGAGCTTCTTCATCGCTAGCTAGTCCCTTGAAAATCAAAGCCATTCTTTCGCAGCCTAAGTCTCTCAAGAAATTATCTTCTCCTCTGTCTTCTTCGTCCGGCTCCTCACACTCTTCATCCTGTTCGCCTCACGCCTCCGCTGATTCCCTGTATGCAGCACCGCATCTGTTCAACTGCCAGAAATTATCTCCTGTGCCGCTTGGGTATCCAATTGGGGTCGGTAACGGGACTGTGAAAGGCTGTTGGTACACGAGGCAATTTGGTGGAAGTCCAAGATACCTTCATCGTGGGCCTCACTGTAATAATTACTGTCACTGA 579 0.4888 MILLNSSIATAARSFLAALTANSDTPAATPGSSPSLVQFLSQELMVKLGELCGSSVTLKCPLPNGDLETLISITSDEDLTNIIELYDRASSSLASPLKIKAILSQPKSLKKLSSPLSSSSGSSHSSSCSPHASADSLYAAPHLFNCQKLSPVPLGYPIGVGNGTVKGCWYTRQFGGSPRYLHRGPHCNNYCH. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01623 192 SUPERFAMILY CAD & PB1 domains 42 110 - -
Seca12g01623 192 SMART PB1_new 29 106 IPR000270 GO:0005515
Seca12g01623 192 PANTHER OS05G0427100 PROTEIN-RELATED 42 122 - -
Seca12g01623 192 Pfam PB1 domain 42 91 IPR000270 GO:0005515
Seca12g01623 192 Gene3D - 37 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01623 Seca-Chr12 17553528 17554831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01623 43 95 MAP Kinase Kinase Kinase AT1G04700 47.170 1.07e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01623 - - gsj:114393520 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01623 12 17553528 17554831 Seca12g01623 12 17553528 17554831 ECH
Seca12g01623 12 17553528 17554831 Seca4g02989 4 51188447 51189377 PCT