Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01621 ATGGCAACGCTAAAACCCCTGTTCCATTTCTGGTTTTTCCTCCAACTCCAACTCCAACTCTTCTTCCCTCCCATTTTTGCCCTCGATTTCCTGCTCAATTCCTTCACCGGCATCACCAACCTCACTCTCATCAACGATGCTCGCATCGACGCCTCCGTTATCCGCATGACCAACGACTCCAACCAATACTCTTTAGGTCGAGCTTTCTACCCCATAAAAGTCCCCATGAAAACACAACAACCCTCCCCCAATTCCAATTCCTCAACAATTTCTTCCTTCTCCACTTCCTTTGTTTTCTCTATCTTGCCACAGATCGCAACCAGCCCTGGCTTCGGTCTCGCCTTCGTCCTCTGCAACACCACTTCCCCTCCCGGAGCACTCGCTAGCCAGTACTTCGGTCTTTTCACCAACGCAACAACCCCAACCGTTTTCCCCCTTCTCGCCGTCGAATTCGACACCGGTCAAAACCCTGAGTTCAACGACATCGACGACAACCACATCGGAATCGACCTCGACAACATCGAGTCGAAAAACTCAACCCCTGCAGGGTACTACAATTCCAGCGGCGGATTCGTCCCGTTCCGAATGCGCAGTGGTGAGAACGTCCACGCTTGGATCGAATTCAACGGCAAGAGTTTGGAGATAAACGTGACGGTTGCTCCGATCGGTGTTTCACGCCCTTTGAAGCCAACGCTTTCGTATAAAAATCCAGAGATGGCTAATTACTTGTCTTCTGATATGTACGTAGGGTTTTCCGCTTCGAAAACGAATTGGATCGAGGCGCAGAGAGTTCTAGCATGGAGCTTCAGCGACGCAGGGGCTGCGAGGGAGATAAACACAACGAACCTTCCAGTGTTCAGGCTAGAAACGACGTCGTCTTCGCTTTCTGGTGGAGCAATTGCAGGGATTGTGGTTGGTTGTTTTGCGTTTGTGGTGCTTTGTGCATCTGTGTTTTACTTGTGGTGGCGAAAAAGGAAAATGAAAGAGCAAGAGGAAGATGAAGTGGAAGAATGGGAGCTTGAGTATTGGCCACACAGATTCTCCTACGAGGAACTAAGCGTGGCTACAGAGGAATTCCATAGAGACCACCTTCTAGGTTCTGGAGGGTTCGGAAGAGTGTACAAAGGGACACTATCGAATAAGACCCAAGTTGCAGTCAAATGCGTCAACCACGATTCCAAACAAGGGTTACGAGAATTCATGGCAGAGATTTCAAGTATGGGGAGGTTGCAGCATAAGAATTTGGTTCAAATGCGAGGATGGTGCAGAAAAGGGAACCAGCTTATGCTAGTTTATGATTACATGCCCAATGGAAGCCTCAACAAGTGGGTATTTGACAAACCCGCGAAGCTTTTGGGATGGGAACAGCGCCGGAAAATTCTTGTCGACGTGGCAGAGGGGTTGAACTATCTTCACCATGGTTGGGACCAGGTTGTGATTCACAGAGACGTTAAATCTAGTAACATCTTGTTGGATGCAGAAATGAGAGGAAGGCTAGGAGATTTTGGTTTGGCGAAGCTTTACCAACACGGGGAAATTCCCAACACCACGCGTGTGGTGGGGACTTTGGGGTATTTGGCGCCGGAGATAGCGACGGTGGCGGCGCCGACTTCGGCAAGCGATGTGTATAGTTTTGGGGTGGTGTTGTTGGAGGTTGCGTGTGGACGGAGGCCTATAGAGACTTCCGTGCCGGAGGAGGAGGTGGTGCTCATTGATTGGGTGAGGGATTTGTATGCTAAAGGGTGTGCTGTTGAGGCTGCGGATCCTAGGATTAAGGGTGAGTATGATGTGGGAGATATGGAGATGGTGTTGAAGCTTGGGTTGGCTTGTTGCCACCCTGAGCCACTGAGGAGACCCACCATGAAGGAAGTGGTTGCGCTTCTTCTTGGGGAGGATATAGCGGAGGCGCCGGGGAAAGTTTTGTCTGAGTTGGCTCGTGGTGATGATGACGGTGGCGGAGGGGAATTGGAAGAGGCGGCGCCTTTGCAACCCACCACTCGGATTTGA 2007 0.5062 MATLKPLFHFWFFLQLQLQLFFPPIFALDFLLNSFTGITNLTLINDARIDASVIRMTNDSNQYSLGRAFYPIKVPMKTQQPSPNSNSSTISSFSTSFVFSILPQIATSPGFGLAFVLCNTTSPPGALASQYFGLFTNATTPTVFPLLAVEFDTGQNPEFNDIDDNHIGIDLDNIESKNSTPAGYYNSSGGFVPFRMRSGENVHAWIEFNGKSLEINVTVAPIGVSRPLKPTLSYKNPEMANYLSSDMYVGFSASKTNWIEAQRVLAWSFSDAGAAREINTTNLPVFRLETTSSSLSGGAIAGIVVGCFAFVVLCASVFYLWWRKRKMKEQEEDEVEEWELEYWPHRFSYEELSVATEEFHRDHLLGSGGFGRVYKGTLSNKTQVAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMRGWCRKGNQLMLVYDYMPNGSLNKWVFDKPAKLLGWEQRRKILVDVAEGLNYLHHGWDQVVIHRDVKSSNILLDAEMRGRLGDFGLAKLYQHGEIPNTTRVVGTLGYLAPEIATVAAPTSASDVYSFGVVLLEVACGRRPIETSVPEEEVVLIDWVRDLYAKGCAVEAADPRIKGEYDVGDMEMVLKLGLACCHPEPLRRPTMKEVVALLLGEDIAEAPGKVLSELARGDDDGGGGELEEAAPLQPTTRI. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01621 668 ProSiteProfiles Protein kinase domain profile. 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01621 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Seca12g01621 668 SMART serkin_6 359 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01621 668 Pfam Legume lectin domain 28 283 IPR001220 GO:0030246
Seca12g01621 668 FunFam L-type lectin-domain containing receptor kinase S.1 344 434 - -
Seca12g01621 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 286 IPR013320 -
Seca12g01621 668 Pfam Protein kinase domain 359 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01621 668 CDD lectin_legume_LecRK_Arcelin_ConA 28 270 IPR001220 GO:0030246
Seca12g01621 668 FunFam L-type lectin-domain containing receptor kinase S.4 26 277 - -
Seca12g01621 668 Gene3D Transferase(Phosphotransferase) domain 1 435 636 - -
Seca12g01621 668 PANTHER - 54 630 - -
Seca12g01621 668 FunFam L-type lectin-domain containing receptor kinase S.4 435 639 - -
Seca12g01621 668 CDD STKc_IRAK 365 628 - -
Seca12g01621 668 Gene3D Phosphorylase Kinase; domain 1 320 434 - -
Seca12g01621 668 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Seca12g01621 668 Gene3D - 26 292 - -
Seca12g01621 668 SUPERFAMILY Protein kinase-like (PK-like) 336 628 IPR011009 -
Seca12g01621 668 MobiDBLite consensus disorder prediction 645 668 - -
Seca12g01621 668 ProSitePatterns Legume lectins beta-chain signature. 147 153 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01621 Seca-Chr12 17516516 17518522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01621 27 630 Receptor kinase-like Gene Family AT1G15530 68.637 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca12g01621 Pkinase 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01621 - - gmx:100780660 1068.14