Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01618 ATGAACCCCTGCGACAGTAGATACTCCGACGCTGCTTCTTTTCGAGGCCGTCGCAGTGATCTGATTGGACCTATTCCGCCGCCGGCTGTTGTCGGTCGCGGCGGTCCGGTTCCGTACGGTGCTCCTTATGCGGCTCATAGACCCAACGGTTTCGGATCCGCACCCGTTACCCCGATTCCGCCCTTTGTGCCCCCTCCTGGGAACTTTAACGTAGGCCGAGGCGGTGGTTTTGGTGGTAGAGTGGGCAATGGTCACGTCGGTGATAGAAAACATGACGTAGCTCGTCACGGTGGTGGTGGTGGTGGAAGAGGTCGTGGCGGTGCTAGAGGTGGAAATCAGGGTTTTAGGGCCTCAGGTAGAGGAGGAAGTGGAGGCAGAGGCGCTGGGTTTGGAGGTAGACATGGTAGTGGATCTTCTAGGGATGAATTGAACAACATTGCACTCCCTAAGCAAGATTTCAGGAATTTGGTCCCTTTCGAGAAGAACTTCTACGTTGAGAGCCCTTCGGTAAGGGCCATGTCTGATCAACAAGTTATGCAGTACCGTGCCAGTAGGGAGATCACGGTGCAAGGCCATGATGTGCCGAAACCTATTCGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTCATAGCTAAATTGGGTTTTGTTGAGCCCACTCCAATTCAAGCTCAGGGTTGGCCCATGGCTCTGATGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGTACAAGGGGAAGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTGTGAAATTTGGGTCACGAGCAAATATTAGAATTACATGCATCTATGGTGGTGCACCAAAAGGGCCTCAAATTCGTGACCTTAAAAGAGGTGTTGAGATTGTTATTGCTACCCCTGGTCGGCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGACCGAATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTTGGCCAGATTCGACCAGATAGGCAGACATTATATTGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATATAAGGTAATTATTGGGTCACCAGATCTAAAAGCTAATCAATCTATAAATCAAGTCGTTGAAGTTGTAACTGACATGGAGAAATACAATAGATTGATCAAACTGCTGAAAGAAATGATGGATGGGAGCCGAATTCTAATATTTATGGAAACAAAAAAGGGATGTGACCAAGTTACAAGACAATTGAGAATGGATGGATGGCCAGCACTGTCCATCCATGGTGATAAAAACCAGTCTGAAAGGGATTGGGTTTTGGCTGAATTTAAGAGTGGCAGGAGTCCAATAATGACTGCCACTGATGTTGCTGCCCGGGGTCTTGGTAGGATCACTGTGTGTGTAGAATCTTAG 1554 0.4794 MNPCDSRYSDAASFRGRRSDLIGPIPPPAVVGRGGPVPYGAPYAAHRPNGFGSAPVTPIPPFVPPPGNFNVGRGGGFGGRVGNGHVGDRKHDVARHGGGGGGRGRGGARGGNQGFRASGRGGSGGRGAGFGGRHGSGSSRDELNNIALPKQDFRNLVPFEKNFYVESPSVRAMSDQQVMQYRASREITVQGHDVPKPIRMFHEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALMGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGEGPIVLVLAPTRELAVQIQQEAVKFGSRANIRITCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVVTDMEKYNRLIKLLKEMMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLGRITVCVES. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01618 517 MobiDBLite consensus disorder prediction 93 141 - -
Seca12g01618 517 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g01618 517 FunFam probable ATP-dependent RNA helicase DDX17 161 408 - -
Seca12g01618 517 Gene3D - 162 405 IPR027417 -
Seca12g01618 517 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 199 227 IPR014014 GO:0003724
Seca12g01618 517 CDD DEADc_DDX5_DDX17 211 405 - -
Seca12g01618 517 Pfam Helicase conserved C-terminal domain 429 508 IPR001650 -
Seca12g01618 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 405 IPR014001 -
Seca12g01618 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 407 IPR027417 -
Seca12g01618 517 Pfam DEAD/DEAH box helicase 223 394 IPR011545 GO:0003676|GO:0005524
Seca12g01618 517 CDD SF2_C_DEAD 418 508 - -
Seca12g01618 517 Gene3D - 406 509 IPR027417 -
Seca12g01618 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 517 IPR001650 -
Seca12g01618 517 SMART ultradead3 218 421 IPR014001 -
Seca12g01618 517 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 351 359 IPR000629 -
Seca12g01618 517 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 178 508 - -
Seca12g01618 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 508 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01618 Seca-Chr12 17488432 17493383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01618 186 508 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 4.72e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01618 K12823 - gmx:100817092 744.577