Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01610 ATGGGTCGCCATTCTTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACCAGATTTGGTGTTGGTTGCTGGAGTTCTGTTCCTAAACAAGCTGGACTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGAATGTTTTCACAGCAAGAGGAGGATCTTATAATCGGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCTCAGTTACCAGGGAGAACTGATAATGAGATTAAGAATTTCTGGAATTCATGCTTAAAGAAGAAGCTACTGAGGCAAGGGATTGACCCAACTACACACAAGCCTCTCACTGAAGCTCATGTGAAAGAAGAGAATAAAACCATTGAGACAACTCCTATGCAAATACCATTGTCTCAAGGGCCTTCAGCTACATCACAAGGTTCAGCACTTTTAGTAAGTGATTCCAATCACTATGATGTTGGGATAACAGAAGCTTCAAGAGAAATTTTCATGAGCAAACCAGCATTGGACCCTTTATCTTTCTATGATTTCCAAATGGGTGTTGTGCATTCTGGTTATAACTTACCTGTGAGTAATTATCAGACAAGCCTTAAACCATCTGATCAGAGCCAATTTGGAGTAAATTCAAGCTATGGATTCTGTTCAATGCCAAGTCTAACCAATTCAGATCATGGGAATGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATAAGTTCCTTGTTCATGAATGATCAGGTGAAAGAAAGTTCTAGTAATAGCTCAAACATGAACACTATTTATCAAGGAGGAGGAGGAGGGTGTCAAATGAGAAGCATATTGGAAAATGCAGGGTTCTCATGGGAAGGAGAGAACAAGTTAGACCCTTTGTTTCAGTTCCAAGTCAATGCCATAAAATCTGAGGATTTCAGGACAAGTTCATGGGAAGAAGGGCAGCTACAGAATCACAATTCAATAGATTTCACTAGCTATCCGTTAACATCACTGTCAGAGGATCTAACTGGAGCAAATTTTGATGTATTCCAGCATATATGA 1104 0.3967 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIIGLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLRQGIDPTTHKPLTEAHVKEENKTIETTPMQIPLSQGPSATSQGSALLVSDSNHYDVGITEASREIFMSKPALDPLSFYDFQMGVVHSGYNLPVSNYQTSLKPSDQSQFGVNSSYGFCSMPSLTNSDHGNVSVTEFSDNNSASKISSLFMNDQVKESSSNSSNMNTIYQGGGGGCQMRSILENAGFSWEGENKLDPLFQFQVNAIKSEDFRTSSWEEGQLQNHNSIDFTSYPLTSLSEDLTGANFDVFQHI. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01610 367 Gene3D - 68 143 - -
Seca12g01610 367 FunFam Transcription factor MYB86 69 137 - -
Seca12g01610 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca12g01610 367 SMART sant 66 114 IPR001005 -
Seca12g01610 367 SMART sant 13 63 IPR001005 -
Seca12g01610 367 CDD SANT 70 109 IPR001005 -
Seca12g01610 367 PANTHER MYB DOMAIN PROTEIN 55 1 295 - -
Seca12g01610 367 Gene3D - 11 67 - -
Seca12g01610 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g01610 367 CDD SANT 17 61 IPR001005 -
Seca12g01610 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca12g01610 367 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca12g01610 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca12g01610 367 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca12g01610 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g01610 367 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01610 Seca-Chr12 17454344 17455930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01610 1 140 MYB Transcription Factor Family AT4G01680 82.143 6.19e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g01610 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01610 K09422 - gmx:100811140 655.981