Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01603 TTGCCTTCCCCCCCTCTATACTATCACCTTTTTCCACTTAATTATCACCACCCTCTCTCTTTCTCTCTCTTCCCTTGTTCCTCTCTTTCAATTAGGGTTTGTTTCCTCTTTAGGGGTGCTCCTCCTGTAATAAATCTGAGGCTTATACCTCTTGTTGGCTTAGGCTACTTTGTCTCAGGCCAGGAGGGAAAAAACAAGAGCAGCTTCTCAAGGACCTCTAACAAGGGAAAAAAAAAAGGGAAAATGGCATCATCCAGCTCTTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATTTTTGCACCTTACTTCCCACCTGAAGAGCCTCAAAAATTTGCAAATGTCCACAAAATATTTGGTGCTAGCAATGTGACTAAGCTCCTCAATGAACTCCTTCCTCACCAGAGAGAGGATGCAGTGAACTCCCTTGCTTATGAAGCAGAAGCAAGAGTGAGGGACCCAGTTTATGGCTGTGTAGGTGCCATCTCTTTCCTCCAGAGACAAGTTCAAAGGCTTCAAAAGGAACTTGATGCTGCTAACGCTGATCTTCTCCGCTATTCCTTCAGTGACATCCCTCCAGCTAATTCTCTTTCATTTCCACCAGTAGCAATGTCTTCACTTCAACAAATCCCTCAAAGGCAGTTTCAGTTTAGTAGTGCAAGAATTAATGTTGGTAATGAAGGAAGTGGGTTTTATAGGCAATCTCCTACCACTACTTATTCTTTTCCTTATTCTCTTCCATGGACTGATACTTCCTCAGAGGACATCAGTGAGGTTGGAGGTGGTGGTGGTGGAGGAGGAAATATATAA 834 0.4365 LPSPPLYYHLFPLNYHHPLSFSLFPCSSLSIRVCFLFRGAPPVINLRLIPLVGLGYFVSGQEGKNKSSFSRTSNKGKKKGKMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSFSDIPPANSLSFPPVAMSSLQQIPQRQFQFSSARINVGNEGSGFYRQSPTTTYSFPYSLPWTDTSSEDISEVGGGGGGGGNI. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01603 277 ProSiteProfiles LOB domain profile. 90 191 IPR004883 -
Seca12g01603 277 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 89 214 - -
Seca12g01603 277 MobiDBLite consensus disorder prediction 63 89 - -
Seca12g01603 277 Pfam Lateral organ boundaries (LOB) domain 91 188 IPR004883 -
Seca12g01603 277 Coils Coil 170 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01603 Seca-Chr12 17318985 17321453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01603 82 219 AS2 family AT5G63090 81.944 1.33e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g01603 LOB 7.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01603 - - gmx:100803667 309.686