Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01592 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTCCTTCCATACCATTCTTTTATAGCTCTTGCAGTAAACCAACAAGGGGAGGCTCTTCTTTCATGGAAGAGAACCCTGAATGGATCAGTGGGGGTATTGAGTAACTGGGACCCAGTTGATGATACACCATGTAGCTGGTTTGGAGTCAGTTGCAACTTGAAGAATGAAGTAGTACAATTAGATCTGAGGTATGTGGATTTGCTTGGAGGACTTCCAACTAATTTCACCTCATTGCTTTCCTTGAATAGTCTCATCTTAACTGGAACCAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAACCTTGGTGAACTCAGCTACTTGGACTTGAGTGACAATGCCTTGAGTGGTGAAATCCCAAGTGAGCTCTGCTACTTGCCTAAACTACAGGAACTTCATCTGAACTCCAACGACCTTGTGGGGTCAATTCCAGTTGCAATTGGGAACCTCACAAAGTTGGAGAAGCTGACTTTATATGACAATCAACTCAGTGGTGAAATTCCCAGTACCATAGGGAACCTGGGGAGCCTACAAGTGATAAGAGCAGGAGGTAACAAGAATCTTGAAGGCCCTTTGCCACAGGAAATTGGCAACTGTTCCAATTTGGTCATGTTGGGCCTTGCTGAAACAAGTATCTCAGGTTTTTTACCACCAACACTTGGCCTCCTGAAGAAGCTTGAAACCATTGCCATTTACACTTCCCTCCTCTCAGGACAAATACCCCCTGAACTTGGTGACTGCACAGAGCTGCAAAACATCTACCTTTATGAGAATTCCCTCACTGGATCCATTCCAAGCAAATTGGGGAACCTTATAAACCTCCAAAATCTTCTTCTGTGGCAGAACAACTTAGTTGGCACAATCCCTCCAGAGATTGGAAACTGCTACCAGTTATTAGTGATTGACGTGTCAATGAATTCAATAACAGGAAGCATTCCCAAAAGTTTTGGGAACTTGACTTCTCTGCAAGAACTCCAACTCAGTGTGAACCAAATTTCAGGGGAGATTCCTGGAGAACTTGGAAATTGTCAGCAACTCACTCATGTGGAGCTGGACAACAACCAAATAACAGGCACAATACCCTCCGAATTGGGAAACCTTGGGAATCTAACGTTGTTATTCCTATGGCACAACAAGCTACAAGGTAACATACCCTCGTCCCTTTCCAATTGTCAAACCCTTGAGGCTATTGATCTATCACAGAATCAGTTGACGGGTCCCATACCAAAGGGGATATTCGAGCTCAAGAATCTCAACAAGCTTTTGTTGCTCTCTAACAATCTCTCTGGTAAAATCCCCTCTCAAATTGGGAATTGTTCCTCTCTTATTCGCTTCAGAGCAAACGACAACAATATTACAGGGAGCATCCCTTCACAGATTGGGAATCTCAAGAATTTGAATTTCTTGGACCTAGGGAACAATCGGATTTCCGGAGTTATCCCGGAGGAAATCTCCGGCAGCCGGAATCTCACCTTTTTGGACTTGCATTCCAATTTCATCGCCGGAAACTTGCCTGAAAGTCTGAGCCAGCTCGTCTCTCTTCAATTTCTTGATGTCTCCGATAACATGATTGAAGGCACACTGAGCCCTACCCTCGGTTCACTCTCTGCTCTCACCAAACTGGTTCTCCGGAAGAATCGTATCTCCGGGTCAATTCCGAGTCGACTCGGTTCCTGTTCCAAGATGCAGTTGCTGGACCTAAGCAGCAACAGTCTCTCCGGCGAAATTCCCGGCAGCATCGGGAACATTCCGTCGCTGGAAATTGCTCTGAATCTGAGCATCAACCAACTCTCCGGTGAGATTCCTCGGGAGTTTTCAGGTCTGACGAAGCTCGGAGTCTTGGACATATCTCACAACGTTCTCGCCGGAAACCTTCACTATCTCGCCGACCTTCAAAATCTCGTGGTCCTCAATATCTCCTACAACAAATTCTCCGGTCGTGTTCCAGACACGCCATTCTTCGCGAAGCTTCCATTAAGCGTGCTCACGGGAAACCCCTCGCTGTGCTTCTCCGGCAACCAATGCGACGGCGCCGAAGGCGCCGGGAAATCATCTCGGCGGAGGAGGGAGGCGCGCGTGGCAATGGTGGTCCTGCTATGCGTCGCGTGCGTGCTCCTCATGGCGGCGCTTTACGTCGTCGTTTCAGGTAAACGACGAGGGGACCAAGAAAACGACGCGGACCTCGATGGAAAAGACAGCGACGTTGACATGGCCCCACCTTGGGAGGTGACACTGTACCAGAAGCTCGACCTGTCAATCTCTGACGTAGCGAAATGCCTCTCTGCTGGCAACGTCATCGGCCACGGTCGATCCGGCGTCGTTTACAGGGTCAACATGCCTGCCACCGGATTGACCATCGCGGTAAAAAAATTCAGGTCATCGGAGAAATTCTCGGCATCGTCGTTTTCGTCGGAAATTGCCACGCTGGCAAGAATCCGGCACCGGAATATCGTGCGCCTCTTAGGCTGGGGTGCCAACCGGAGAACAAAGTTACTGTTCTATGATTATTTACCTAACGGTAATTTGCATTCCCTGTTACACGAGGGGTGCACAGGATTAATGGAATGGGAGACGCGGCTCAAGATAGCACTAGGCGTGGCTGAGGGTTTAGCTTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGGGATGTGAAGGCGCAAAACATTTTGTTAGGAGACACATATGAGGCTTGTTTGGCTGATTTTGGATTCGCTCGGTTCGTGGAAGAAGATCACGCTTCGTTTTCCCTTAATCCACAGTTCGCTGGTTCTTACGGCTACATTGCTCCTGAGTATGCTTGTATGCTTAAAATAACGGAGAAGAGCGATGTATATAGCTTTGGGGTGGTCCTACTAGAGATAATAACGGGGAAAATGCCGGTGGATCCATCATTCCCGGATGGACAACATGTAATTCAATGGGTGAGGGAGCATTTGAAGAGCAAGAAGGACCCAATTGAGGTTCTGGATTCCAAGCTTCAAGGCCATCCAGACACACAAATACAAGAGATGTTACAAGCACTTGGTATCTCTCTCTTGTGTACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTCGCTGCATTATTAAGGGAAATTCGACACGATACTCCTGCAGGTGCTGAGCCCCACAAGCCTAAAAGAACTACTGAAGCTTCGTCCTATTCTTCGTCCTCTGTTACCCCTGCTCAGTTGTTGCTCCTTCAATCCAATTCACATTCCTCATCACTTGCTTATTCCTCTTCCTCACTAGCACCCTACCACTCACCAAGGAACCAATCATGA 3342 0.4776 MPVNPWTLFFLCISLFLPYHSFIALAVNQQGEALLSWKRTLNGSVGVLSNWDPVDDTPCSWFGVSCNLKNEVVQLDLRYVDLLGGLPTNFTSLLSLNSLILTGTNLTGSIPKEIGNLGELSYLDLSDNALSGEIPSELCYLPKLQELHLNSNDLVGSIPVAIGNLTKLEKLTLYDNQLSGEIPSTIGNLGSLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSISGFLPPTLGLLKKLETIAIYTSLLSGQIPPELGDCTELQNIYLYENSLTGSIPSKLGNLINLQNLLLWQNNLVGTIPPEIGNCYQLLVIDVSMNSITGSIPKSFGNLTSLQELQLSVNQISGEIPGELGNCQQLTHVELDNNQITGTIPSELGNLGNLTLLFLWHNKLQGNIPSSLSNCQTLEAIDLSQNQLTGPIPKGIFELKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGSIPSQIGNLKNLNFLDLGNNRISGVIPEEISGSRNLTFLDLHSNFIAGNLPESLSQLVSLQFLDVSDNMIEGTLSPTLGSLSALTKLVLRKNRISGSIPSRLGSCSKMQLLDLSSNSLSGEIPGSIGNIPSLEIALNLSINQLSGEIPREFSGLTKLGVLDISHNVLAGNLHYLADLQNLVVLNISYNKFSGRVPDTPFFAKLPLSVLTGNPSLCFSGNQCDGAEGAGKSSRRRREARVAMVVLLCVACVLLMAALYVVVSGKRRGDQENDADLDGKDSDVDMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYRVNMPATGLTIAVKKFRSSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLHSLLHEGCTGLMEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGDTYEACLADFGFARFVEEDHASFSLNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKMPVDPSFPDGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDTPAGAEPHKPKRTTEASSYSSSSVTPAQLLLLQSNSHSSSLAYSSSSLAPYHSPRNQS. 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01592 1113 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1050 - -
Seca12g01592 1113 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01592 1113 SUPERFAMILY L domain-like 27 299 - -
Seca12g01592 1113 MobiDBLite consensus disorder prediction 1054 1076 - -
Seca12g01592 1113 ProSitePatterns Protein kinases ATP-binding region signature. 781 805 IPR017441 GO:0005524
Seca12g01592 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 852 1067 - -
Seca12g01592 1113 Gene3D Transferase(Phosphotransferase) domain 1 852 1072 - -
Seca12g01592 1113 Gene3D Phosphorylase Kinase; domain 1 756 851 - -
Seca12g01592 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Seca12g01592 1113 SMART LRR_sd22_2 382 408 - -
Seca12g01592 1113 SMART LRR_sd22_2 165 191 - -
Seca12g01592 1113 SMART LRR_sd22_2 478 501 - -
Seca12g01592 1113 SMART LRR_sd22_2 117 143 - -
Seca12g01592 1113 SMART LRR_sd22_2 623 648 - -
Seca12g01592 1113 SMART LRR_sd22_2 526 552 - -
Seca12g01592 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Seca12g01592 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 604 691 IPR032675 -
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 518 603 IPR032675 -
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 424 517 IPR032675 -
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 326 423 IPR032675 -
Seca12g01592 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 29 138 IPR032675 -
Seca12g01592 1113 MobiDBLite consensus disorder prediction 1054 1068 - -
Seca12g01592 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 520 606 - -
Seca12g01592 1113 SMART LRR_typ_2 526 549 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 550 574 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 286 310 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 382 406 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 334 358 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 430 454 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 117 141 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 478 502 IPR003591 -
Seca12g01592 1113 SMART LRR_typ_2 165 189 IPR003591 -
Seca12g01592 1113 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Seca12g01592 1113 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Seca12g01592 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Seca12g01592 1113 SUPERFAMILY RNI-like 267 638 - -
Seca12g01592 1113 SUPERFAMILY Protein kinase-like (PK-like) 764 1050 IPR011009 -
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 221 325 IPR032675 -
Seca12g01592 1113 FunFam LRR receptor-like serine/threonine-protein kinase 764 851 - -
Seca12g01592 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase 607 689 - -
Seca12g01592 1113 SMART serkin_6 775 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01592 1113 ProSiteProfiles Protein kinase domain profile. 775 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01592 1113 Gene3D Ribonuclease Inhibitor 139 220 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01592 Seca-Chr12 17160424 17165564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01592 25 1103 Receptor kinase-like Gene Family AT5G56040 55.423 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca12g01592 Pkinase 9.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01592 - - gmx:100778064 1825.06