LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g01576	ATGCAGATTTTCAACCCCATTGTTCCTGAGAACCTTATAATCAGGGCAATCCTGATATCTGCATTGTTGTCATGTGTCGCATCCTCATCCTCTGACGCTGGGATAAACGAAGCTGGTCTCACGTGCGGGTCTTATAGGTACCCTGGTGAAGGTGCAGGGAAGTTGATGCAAAACTTCATGGCTCTAATGGACGCCGTGTCGTTTCAAGTCAAAGAACGAGGTTGGGGAGCACAGACATTGCTTGGTTATTGGCCTCCAATGTACGCGTTAGGCCAATGCAACCATGATCTCAATCCCACACAGTGCTACTCATGCTTCACACAAGCGAGACAATTGCTATCAAGGTGCATACCAAAGGTAGCTGGTAGAATTTACATTGATGGTTGTTTCCTTCGTTATGATAATTATACTTTCTTCACCGAAAGCGTGGACCCTAATAACGACGCAAACGTGTGCGACTCGCCGCCGCCGACGCAGCCTTTGGAGTCCAAAGTGGTTGCGTCGGTGATATTGAACGTGACAAAGAGCGCAGGGGAACACAGGTTCGCAGTGGATGCGGAGGGAGGTGTTTTTGCTTTGGCGCAGTGCTGGGAAACGCTAGATAAAGGGAACTGCCAGAGATGTTTGAGAGAAGCAGAGGGAAAATTGCAGGGGTGTGTGCCTGGTGCTGGGGGTAGGAGTTTATTTACTGGTTGTGTTTTGAGGTATTCAACAAAGAAATTCTACAACGACGTTATTGTACCGCATGAGATAAAGGATCAACCACAACCAGTTCCAGAAAGACGTAGTGTCTGGAAGATCGTTGCATGTGCAATATCAGCAGTTGCAGTGGTTTTACTTATTGTCATTGGTGCACTTCTATGTTGGAGGAGAAAAGCATCGCGTGGCAAAGGAAGCAACGATTTTGGTGCGTCGCCTGGTTTAGCCTACATGTCTGGTTTCAGTTATAGGTACGATTTGCTTGAGAAGGCCACAAATTATTTTGATCCTGCAAACCAATTAGGCCAGGGAGGAGCTGGTTCTGTGTTCAAAGGAACACTCCCTTCAGGGACGAACGTTGCTGTTAAACGACTGTTTTTTAATTCACGACAATGGAAAGATGGGTTCTTCAACGAAGTCAATTCGATTAATGGGATTCAACACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGGCCTGAAACCCTGTTGGTTTATGAATATGTGCCCAATAAAAGTCTTGATCAAATCCTTTTTGGTAAGGACTCGGAAAATGTTCTGACCTGGGAGAAACGATTTCAAATCATATGTGGGATAGCTGAAGGCTTAGCATACCTTCATGGAGGCTCTGGAACAAAGATTATCCACAGAGACATAAAGGCCAGCAACATTGTGCTTGATGAGAATCTTAATCCAAAAATTGCTGATTTTGGTCTTGCTCGTTCTGTTGCTGAAAATAAATCTCATCCTAGCACTGGAATTGTTGGGACACTGGGATATATGGCTCCTGAGTATGTCACCCAAGGACAACTGACAGAAAAGGCAGATGTCTATGCTTTTGGTGTGATGGTTATTGAAATTGTCTGTGGCAAGAAGAACAGTGTTTACACACAAGGGTCAACTTCAGTACTCCACTCTGTTTGGAAGAATTACAAGGCAAACAATATCACAGCATTTGTTGATCCATCTCTGGATGGCAAATTTGTGGCAGAAGAGGCATCAAATGCACTCCAAGCTGGCCTTCTTTGTACACAATCTTCAGTTACTCTTAGACCATCCATGTCTGAAGTGGTTCAAATGCTAACCAAGAAAGACTACATTATTCCCTCCCCAAAGCAACGGCCATTCCTCAATTCTAATATGCCAAGTCTTGAAAAACGGACCTTGACTTCCACCCTGAGTGCTATGTCTTCACATGGGCCTCCAAGTGCAAGATCCTCTTTCCACAGCACCACCAGTTCCTTAATCCTACACGAAGAATCAACTCTACTGGAGAATTCCTATTCTTCTTCTCCCCGGTTCACAACTACGTGGAGCCCTGATTCAAATATCCAAGCAAATATTAGGGCACCTGAGCCGAGATAG	2070	0.4498	MQIFNPIVPENLIIRAILISALLSCVASSSSDAGINEAGLTCGSYRYPGEGAGKLMQNFMALMDAVSFQVKERGWGAQTLLGYWPPMYALGQCNHDLNPTQCYSCFTQARQLLSRCIPKVAGRIYIDGCFLRYDNYTFFTESVDPNNDANVCDSPPPTQPLESKVVASVILNVTKSAGEHRFAVDAEGGVFALAQCWETLDKGNCQRCLREAEGKLQGCVPGAGGRSLFTGCVLRYSTKKFYNDVIVPHEIKDQPQPVPERRSVWKIVACAISAVAVVLLIVIGALLCWRRKASRGKGSNDFGASPGLAYMSGFSYRYDLLEKATNYFDPANQLGQGGAGSVFKGTLPSGTNVAVKRLFFNSRQWKDGFFNEVNSINGIQHKNVVKLLGCSIEGPETLLVYEYVPNKSLDQILFGKDSENVLTWEKRFQIICGIAEGLAYLHGGSGTKIIHRDIKASNIVLDENLNPKIADFGLARSVAENKSHPSTGIVGTLGYMAPEYVTQGQLTEKADVYAFGVMVIEIVCGKKNSVYTQGSTSVLHSVWKNYKANNITAFVDPSLDGKFVAEEASNALQAGLLCTQSSVTLRPSMSEVVQMLTKKDYIIPSPKQRPFLNSNMPSLEKRTLTSTLSAMSSHGPPSARSSFHSTTSSLILHEESTLLENSYSSSPRFTTTWSPDSNIQANIRAPEPR.	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g01576	689	FunFam	Cysteine-rich receptor-like protein kinase 2	299	403	-	-
	Seca12g01576	689	CDD	STKc_IRAK	334	598	-	-
	Seca12g01576	689	ProSiteProfiles	Gnk2-homologous domain profile.	35	138	IPR002902	-
	Seca12g01576	689	SUPERFAMILY	Protein kinase-like (PK-like)	314	623	IPR011009	-
	Seca12g01576	689	SMART	serkin_6	328	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g01576	689	MobiDBLite	consensus disorder prediction	664	681	-	-
	Seca12g01576	689	Gene3D	-	42	138	IPR038408	-
	Seca12g01576	689	Gene3D	-	155	241	IPR038408	-
	Seca12g01576	689	Pfam	Protein kinase domain	331	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g01576	689	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	87	629	-	-
	Seca12g01576	689	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Seca12g01576	689	Gene3D	Transferase(Phosphotransferase) domain 1	404	605	-	-
	Seca12g01576	689	ProSiteProfiles	Gnk2-homologous domain profile.	139	241	IPR002902	-
	Seca12g01576	689	Pfam	Salt stress response/antifungal	78	136	IPR002902	-
	Seca12g01576	689	Pfam	Salt stress response/antifungal	181	238	IPR002902	-
	Seca12g01576	689	MobiDBLite	consensus disorder prediction	664	689	-	-
	Seca12g01576	689	Gene3D	Phosphorylase Kinase; domain 1	307	403	-	-
	Seca12g01576	689	FunFam	Cysteine-rich receptor-like protein kinase 2	404	604	-	-
	Seca12g01576	689	ProSiteProfiles	Protein kinase domain profile.	328	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g01576	Seca-Chr12	16983100	16986342	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g01576	18	644	Receptor kinase-like Gene Family	AT1G70520	41.705	2.95e-155	462

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca12g01576		Pkinase	5.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g01576	-		-	gmx:100780384	866.3