Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01560 ATGCAGAGCGCGGTTTTACCTCTCTCCCTACCACCACTCTCTCTCCACAAACCTCGCACTTGCTTCTTCACTACCAATTTCTCTGCTTCCATTTCCAAACCCAACTACAATGCCTATTCCTCTTCCTTCCCATGCACACCTCTTGCTTCTTCTTCCTCTTCCAAACTCATCCCCTGGTCACACCTCAATTCCTCCCAATCCTTCCAAATCAACGCAACCGCCAGCACCACCGCCGACTCCTCTAGCAGTAGTTTGTTCAAAACTCTGGAGCTAGGAGTCCTGTTTTGCCTCTGGTTCACCTTCAACATCTACTTTAACATCTACAACAAACAGGTATTGAAGGTGTACCATTTGCCACTAACTGTAACTTCTTTTCAGTTTGCTGCGGGGACTCTCCTTGTGCTGTTTATGTGGGGTTTTAATCTCTATAAGAGGCCAAAAGTCAGTGGTGCTCAGCTTGTGGCAATATTTCCATTGGCTCTAGTACATACTTTGGGGAATGTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCTTTCACTCATACCATAAAAGCCATGGAGCCTTTCTTTTCGGTGATCCTGTCTTCTATGTTCCTTGGAGAGGCGCCTACTACATGGGTGGTTTCTTCCCTTGTTCCTATTGTTGGTGGAGTGGTACTGGCTTCTGCTACGGAGGCTTCTTTCAATTGGGCTGGGTTTTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCCCGTAATGTTCTTAGCAAAAAGCTCATGGTTAAGAAGGAGGAAGCTATGGACAACATAACCCTCTTCTCAATAATAACAGTTATGTCCTTCTTGTTATCAATACCTCTAACTATCTTCATGGAGGGTGTCAAATTTACCCCTGTTTACCTGGAATCTGCTGTGAGTATCTTAATGACTGAAACTGATAGGATTGGTGTTAGTATTGGATTAAATGTTCAACAAGTGTACATAAGATCTCTTCTCGCTGCACTCTGTTTCCATGCATATCAACAAGTTTCGTACATGATACTAGAAAGAGTATCACCTGTTACCCACTCTGTGGCAAACTGTGTGAAGAGGGTCGTGGTTATAGTCAGTGCTGTCATTTTCTTCCAAACACCTGTCTCACCAATTAACGCATTCGGGACTGCTATAGCTCTTGCAGGCGTTTTCCTCTATTCTAGGGCGAAGCGAATTAAGCCAAAAACTTCTTAA 1215 0.4387 MQSAVLPLSLPPLSLHKPRTCFFTTNFSASISKPNYNAYSSSFPCTPLASSSSSKLIPWSHLNSSQSFQINATASTTADSSSSSLFKTLELGVLFCLWFTFNIYFNIYNKQVLKVYHLPLTVTSFQFAAGTLLVLFMWGFNLYKRPKVSGAQLVAIFPLALVHTLGNVFTNMSLGKVAVSFTHTIKAMEPFFSVILSSMFLGEAPTTWVVSSLVPIVGGVVLASATEASFNWAGFWSAMASNLTNQSRNVLSKKLMVKKEEAMDNITLFSIITVMSFLLSIPLTIFMEGVKFTPVYLESAVSILMTETDRIGVSIGLNVQQVYIRSLLAALCFHAYQQVSYMILERVSPVTHSVANCVKRVVVIVSAVIFFQTPVSPINAFGTAIALAGVFLYSRAKRIKPKTS. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01560 404 Pfam Triose-phosphate Transporter family 90 394 IPR004853 -
Seca12g01560 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 129 224 - -
Seca12g01560 404 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 89 403 IPR004696 GO:0016020|GO:0022857|GO:0055085
Seca12g01560 404 PANTHER SOLUTE CARRIER FAMILY 35 91 398 - -
Seca12g01560 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 322 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01560 Seca-Chr12 16503859 16507736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01560 3 402 Antiporters AT5G33320 63.070 5.50e-166 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01560 K15283 - gmx:100780925 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01560 12 16503859 16507736 Seca4g03057 4 52456730 52467890 ECH
Seca12g01560 12 16503859 16507736 Seca12g01560 12 16503859 16507736 ECH
Seca12g01560 12 16503859 16507736 Seca4g03057 4 52456730 52467890 PCT