Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01556 ATGGCCCTTGAGACAAATTTCAAAGAAAACTATGTCTCACAGACAATGCATTTGCAAGAAAACTACTTGAATCCCAGCATGAAAGATGAGCTTCCTTTTGGGGCTCCTTCCTCACAGGGTTTCTTGCAAGATTTTAACCATATTGACCAATTTCATGGGAATGGCTCCTCATCCAACAATCCAGTTTTTGGGGTCCAAACTCCAAATTTTGATCCTTTTAATAATGCAACCAGTGAGTGTGCACCCACAGATTTTGAAGTTTATGAGGGCAAGCCTTTTGCTGAGAGCAATGGTAGTGGACATGCTCACATTATGGACAATTTCCAATATGAAGGTTATGGTTTGAACCTGATCCCTGAGAGGAATCAACTGGATATGATGGTTGCAAACCAAAGTTATATGCCCTTTAATCCTCTAGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCCCCAGCAAACTATTATAAAAGAGTTGACATGAATAAAAACAACAGGGAATCTCCAAACACTAGAAGAACATATAAAGCTAGAAAGAAGTCCAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAACTGGTTGGACAATATGGAGTAAGGAAGTGGTCTAATATTGCTCAAAAGTTGCCTGGGAGAATAGGGAAACAATGCAGAGAACGGTGGCATAATCATTTAAGGCCTGACATTAAGAAGGACATATGGACTGATGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATAGGGAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACAGAGAACTCAATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATACTCCAAAAGAAAATGTCGCTCTAAGTACCCTAGAGGCTCTCTTCTGCAGGACTATATCAAAAGCTTGAACTTGGACCAAAACCCACCAAGAGACTTTCGAAAAAAATCATCTTCTGCTAATTATAATACTAATGCCAAGACAAACAATACTAGCACAAGCAAAACAGCACCACCTCAGCCCCAGATTATAGATCAATTTTGTTCCAATGACCGCATGGTGCCAACAAACTTTGACTTCAATGAGGTCCCAGATTTTTGCTTGGATGATAATTTGTTTGAAGAGGGGTGTGGTATAGATTCTTTGCTAGATGATTTGCCAAGTGTTCCTACCATGAATGAGAAAGATTTTGATGGAAAAATTCAATGTGCTCTAACTATGGAGGGAAAGCAAATTGATAAGGGAAAAGGAGCCACGCAAGTTGTGAATCTTGATGAGCATCACTTTGAGGCAGAGATGTCAGAGGAGATGATGGCATCCACTGTGGGGATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATGTGTCATGTTAATGGAAGTATTGATGTCTAA 1428 0.3992 MALETNFKENYVSQTMHLQENYLNPSMKDELPFGAPSSQGFLQDFNHIDQFHGNGSSSNNPVFGVQTPNFDPFNNATSECAPTDFEVYEGKPFAESNGSGHAHIMDNFQYEGYGLNLIPERNQLDMMVANQSYMPFNPLETKPLNFVVPDEVSCISPANYYKRVDMNKNNRESPNTRRTYKARKKSNIVKGQWTVDEDRLLIQLVGQYGVRKWSNIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQDYIKSLNLDQNPPRDFRKKSSSANYNTNAKTNNTSTSKTAPPQPQIIDQFCSNDRMVPTNFDFNEVPDFCLDDNLFEEGCGIDSLLDDLPSVPTMNEKDFDGKIQCALTMEGKQIDKGKGATQVVNLDEHHFEAEMSEEMMASTVGIEVKKEMDLVEMMCHVNGSIDV. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01556 475 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
Seca12g01556 475 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Seca12g01556 475 PANTHER MYB PROTEIN-RELATED 190 338 - -
Seca12g01556 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
Seca12g01556 475 FunFam Transcription factor MYB119 243 307 - -
Seca12g01556 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Seca12g01556 475 SMART sant 241 289 IPR001005 -
Seca12g01556 475 SMART sant 189 238 IPR001005 -
Seca12g01556 475 Gene3D - 189 242 - -
Seca12g01556 475 MobiDBLite consensus disorder prediction 324 350 - -
Seca12g01556 475 CDD SANT 245 287 IPR001005 -
Seca12g01556 475 Pfam Myb-like DNA-binding domain 190 236 IPR001005 -
Seca12g01556 475 Pfam Myb-like DNA-binding domain 245 284 IPR001005 -
Seca12g01556 475 MobiDBLite consensus disorder prediction 315 350 - -
Seca12g01556 475 FunFam Transcriptional activator Myb isoform A 189 242 - -
Seca12g01556 475 CDD SANT 193 236 IPR001005 -
Seca12g01556 475 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
Seca12g01556 475 Gene3D - 243 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01556 Seca-Chr12 16449166 16451080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01556 61 397 MYB Transcription Factor Family AT4G18770 47.411 1.32e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g01556 Myb_DNA-binding 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01556 K09422 - gmx:100816653 688.723