Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01538 ATGGAAGGTGGGCATGGATATAAGAAGGGATTCTGGAATGTAAAGGAAGACAAGATTCTAATGGATTACGTAAAGGAGAATGGAACAGGGAAGTGGAATCGTATAGCTAAAGTTACAGATTTGAAGAGAAGTGGTAAAAGTTGCAGGCTGAGGTGGATGAATTATCTTAGTCCTGGTGTCAAGCATGGGGACTTCTCAAATCAAGAAGAAGACTTAATCATTCGCCTCCACAAGCTCCTTGGAAATAGGTGGTCTTTGATTGCAGGGAGGATTCCAGGGAGAACTGACAACCAGGTGAAGAACTATTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTAAGAAGGAAAAGAGGTCTCCAAAAGCCGTCCTTAATAAACAAAAGGATGATAATTGCAATAGCACATCAGAGTCCATTGGTGAAGGTGAAAAGCTTGTCCAAAAAAGCTCCTTTGATGGTGATCTCAACTTGGCAAGCACGCACAAAGGAATTGTTACAGATGATTTTGGGAGTGCCTTTTGTTTTGCTAATAATGAGCTTAATCTATATTCTCCTTACTTTATGGAGTCTTTTCAAGAATGTTTTCTTGACCTTTGA 597 0.4003 MEGGHGYKKGFWNVKEDKILMDYVKENGTGKWNRIAKVTDLKRSGKSCRLRWMNYLSPGVKHGDFSNQEEDLIIRLHKLLGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVKKEKRSPKAVLNKQKDDNCNSTSESIGEGEKLVQKSSFDGDLNLASTHKGIVTDDFGSAFCFANNELNLYSPYFMESFQECFLDL. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01538 198 FunFam MYB-related transcription factor 8 61 - -
Seca12g01538 198 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Seca12g01538 198 SMART sant 8 58 IPR001005 -
Seca12g01538 198 SMART sant 61 109 IPR001005 -
Seca12g01538 198 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Seca12g01538 198 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Seca12g01538 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 56 IPR017930 -
Seca12g01538 198 Gene3D - 9 61 - -
Seca12g01538 198 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Seca12g01538 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Seca12g01538 198 Gene3D - 63 138 - -
Seca12g01538 198 FunFam Transcription factor WER 63 134 - -
Seca12g01538 198 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 138 - -
Seca12g01538 198 CDD SANT 12 56 IPR001005 -
Seca12g01538 198 CDD SANT 65 107 IPR001005 -
Seca12g01538 198 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01538 Seca-Chr12 16226012 16226829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01538 5 123 MYB Transcription Factor Family AT5G40330 75.630 5.80e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g01538 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01538 K09422 - zju:107418407 236.498