Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01536 ATGATGAAGAACTTGTACTTGTTTAAAGAAATTTCTCAAAATGTGAGGTCAGGGAGAAGGCTCTCTCTAGGGGAATACAAGAGAGCAATTTCATGGTCTAAGTATTTGGTATCCTCTGGAGCAGCTATAAAGGGAGAAGCTGAAGAGGATTGGAGTGCAGATTTGTCTCAGTTGTTCATTGGTTCCAAATTTGCTTCTGGCAGACATAGCAGAATCTACAGAGGAATCTACAAGCACGTGGATGTGGCAATTAAGCTGGTGAGTCAACCAGAGGAGGATGAGGATTTGGCTGTTTTGCTTGAGAAGCAATTTACTTCTGAGGTTGCTTTGCTGTTTCGGTTGCGCCATCCAAATATCATCACTTTTGTTGCAGCTTGCAAGAAACCTCCTGTCTTTTGTATAATTACTGAATATTTGGCTGGGGGCTCTTTGAGAAAATACCTGCATCAACAAGGACCACATTCAGTTCCTCTCAAACTTGTTCTCAAATTAGCCTTGGATATTGCAAGGGGGATGCAATATCTTCATTCTCAGGGTGTACTTCATAGGGATCTCAAATCAGAAAATCTTCTGTTAGGTGAAGATATGTGTGTAAAAGTGGCAGATTTTGGGATCTCATGTTTAGAATCCCAAACTGGCAGTGCTAAAGGATTTACTGGAACTTACCGTTGGATGGCACCTGAAATGATCAGAGAAAAGAATCATACCAAGAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAGCTTCTAACAGGACTCACACCATTTGAGAACATGACACCAGAGCAGGCAGCATATGCAGTGACTCACAAGAATGCAAGGCCTCAGCTACCATCTGACTGTCCATGGGCATTTAGTCATCTAATCAACAGATGCTGGTCAGCGAATCCAAATAAACGGCCACATTTTGATGAGATAGTCTCAATCTTAGAGAACTATACTGAAGCACTTGAGCAGGATTCAGATTTTTTCTCAAATTACAAACCACGTTCAAGTAACATCATTCAGAGATGCTTACCAAACTGTAATGCTGGCCATAAATCTGCTAGCAATGCTTAG 1065 0.4131 MMKNLYLFKEISQNVRSGRRLSLGEYKRAISWSKYLVSSGAAIKGEAEEDWSADLSQLFIGSKFASGRHSRIYRGIYKHVDVAIKLVSQPEEDEDLAVLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQGPHSVPLKLVLKLALDIARGMQYLHSQGVLHRDLKSENLLLGEDMCVKVADFGISCLESQTGSAKGFTGTYRWMAPEMIREKNHTKKVDVYSFAIVLWELLTGLTPFENMTPEQAAYAVTHKNARPQLPSDCPWAFSHLINRCWSANPNKRPHFDEIVSILENYTEALEQDSDFFSNYKPRSSNIIQRCLPNCNAGHKSASNA. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01536 354 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 317 - -
Seca12g01536 354 ProSiteProfiles Protein kinase domain profile. 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01536 354 CDD STKc_MAP3K-like 65 312 - -
Seca12g01536 354 Pfam Protein tyrosine and serine/threonine kinase 60 312 IPR001245 GO:0004672|GO:0006468
Seca12g01536 354 SUPERFAMILY Protein kinase-like (PK-like) 47 312 IPR011009 -
Seca12g01536 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Seca12g01536 354 Gene3D Transferase(Phosphotransferase) domain 1 141 344 - -
Seca12g01536 354 FunFam Serine/threonine-protein kinase isoform 1 48 140 - -
Seca12g01536 354 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Seca12g01536 354 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Seca12g01536 354 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Seca12g01536 354 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Seca12g01536 354 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Seca12g01536 354 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01536 354 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01536 Seca-Chr12 16151851 16156117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01536 31 321 MAP Kinase Kinase Kinase AT1G62400 64.068 2.05e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca12g01536 PK_Tyr_Ser-Thr 2.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01536 - - gmx:100785212 637.876